View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_40 (Length: 314)
Name: NF4908_low_40
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 24649238 - 24648953
Alignment:
| Q |
17 |
agataatgcattggaagttatatgtattttcaattttaaacttgtttttactttcttggtcagtgtcatggggatgtcgattggcatgacccaacaaaaa |
116 |
Q |
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| T |
24649238 |
agataatgcattggaagttatatgtattttcaattttaaacttgtttttactttcttggtcagtgtcatggggatgtcgattggcatgacccaacaaaaa |
24649139 |
T |
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| Q |
117 |
agagatgaaacttgaaaaagtagtcgtgtcatatttaattctgtcattgtcgtactactattacactaagggatacaaaatacgcgttgaaggaactatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24649138 |
agagatgaaacttgaaaaagtagtcgtgtcatatttaattctgtcattgtcgtactactattacactaagggatacaaaatacgcgttgaaggaactatt |
24649039 |
T |
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| Q |
217 |
ggtacaaagaaatattgcttcaaagaaacagaatatagtaacagacaatacacgatctctctttaccctattctttgttgtctgtg |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24649038 |
ggtacaaagaaatattgcttcaaagaaacagaatatagtaacagacaatacacgatctctctttaccctattctttgttgtttgtg |
24648953 |
T |
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