View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_43 (Length: 300)
Name: NF4908_low_43
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 1252741 - 1253010
Alignment:
| Q |
7 |
ccaaaggatcaaacacaactatgtatcttcaaaatcaaaaagaaaatctgttaatgtcacatgaatattaatatgatcatgtcatgtgtaatttgacaaa |
106 |
Q |
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| T |
1252741 |
ccaaaggatcaaacacaactatgtatcttcaaaatcaaaaagaaaatatgttaatgtcacatgaatattaatatgatcat-----gtgtaatttgacaaa |
1252835 |
T |
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| Q |
107 |
tatataatattttggaactgacttgccacgctgtgctggtggcacaatgatagcatcttcaacctcttctgaaacaagaaggcactgccaaagc---nnn |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252836 |
tatataatattttggaactgacttgccacgctgtgctggtggcacaatgatagcatcttcaacctcttctgaaacaagaaggcactgccaaagcaaaaaa |
1252935 |
T |
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| Q |
204 |
nnnnnnnttgcattttattatatcagaggcaaaacaatgccaaataaaatgcatatcaatttatcgagtgtgtag |
278 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
1252936 |
aaaaaaattgcattttactatatcagaggcaaaacaatgccaaataaaatgcatatgaattaatcgagtgtgtag |
1253010 |
T |
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