View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_low_47 (Length: 281)

Name: NF4908_low_47
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_low_47
NF4908_low_47
[»] chr7 (3 HSPs)
chr7 (1-263)||(42176380-42176642)
chr7 (74-158)||(44615025-44615109)
chr7 (72-135)||(25511715-25511778)
[»] chr1 (1 HSPs)
chr1 (80-172)||(15579533-15579625)
[»] chr8 (3 HSPs)
chr8 (120-212)||(30918122-30918215)
chr8 (95-158)||(30191083-30191146)
chr8 (65-158)||(45071439-45071532)
[»] chr5 (2 HSPs)
chr5 (119-228)||(29659344-29659453)
chr5 (106-150)||(4619780-4619824)
[»] chr3 (3 HSPs)
chr3 (71-225)||(36646300-36646456)
chr3 (71-145)||(45590729-45590803)
chr3 (75-184)||(37273173-37273282)
[»] chr4 (3 HSPs)
chr4 (120-225)||(2996569-2996676)
chr4 (105-184)||(27123304-27123383)
chr4 (80-185)||(33534096-33534201)
[»] chr6 (1 HSPs)
chr6 (105-184)||(2460103-2460182)
[»] chr2 (1 HSPs)
chr2 (74-142)||(40667488-40667557)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 42176642 - 42176380
Alignment:
Q  1 ctatatgttgtttataatttcagatttcctattactatattagtattacctatatgcttctactttagggttgtttgtattgacttaattgaccttatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176642 ctatatgttgtttataatttcagatttcctattactatattagtattacctatatgcttctactttagggttgtttgtattgacttaattgaccttatct 42176543  T
Q  101 cttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgttttcttcttattttgatactctctaagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42176542 cttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgatatttcgttaagttgttttcttcttattttgatactctctaagac 42176443  T
Q  201 aacttatgaaaacaatttataacttgtacgaaatagtttatatataagcacttaaaggataag 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42176442 aacttatgaaaacaatttataacttgtacgaaatagtttatatataagcacttaaaggataag 42176380  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 44615025 - 44615109
Alignment:
Q  74 tttgtattgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacat 158  Q
    |||| |||| ||||||||| |||||||  | ||||||  |||||||| ||||||  ||||||||||||| |||||||| ||||||    
T  44615025 tttggattgccttaattgagcttatctactagcataaccacttgcaaaactgttcaggagagcttatgaaaacaacttatgacat 44615109  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 25511778 - 25511715
Alignment:
Q  72 tgtttgtattgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagag 135  Q
    |||||| ||||||||| |||| |||||||   |||||| |||||||||||||||||| ||||||    
T  25511778 tgtttggattgacttatttgaacttatctacaggcatacgaacttgcaagactgtttgggagag 25511715  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 15579625 - 15579533
Alignment:
Q  80 ttgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgtt 172  Q
    |||||||||||||  ||||||  | |||||||||||||||||||||||| ||||||||| ||  |||||||| |||||| ||  |||||||||    
T  15579625 ttgacttaattgaatttatctactagcataagaacttgcaagactgtttgggagagcttgtggaaacaacttatgacatgtccataagttgtt 15579533  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 30918215 - 30918122
Alignment:
Q  120 agactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgttttcttcttattttgata--ctctctaagacaacttatgaaaa 212  Q
    |||||||||  |||||||||||| ||||||||||||||||||  ||||||||||||  |||||||  |||  ||||| |||| ||||||||||||    
T  30918215 agactgtttgagagagcttatgaaaacaacttgtgacatttc-ataagttgttttcagcttatttccataagctctccaagaaaacttatgaaaa 30918122  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 30191083 - 30191146
Alignment:
Q  95 ttatctcttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacat 158  Q
    |||||| |||||||||| |||||  ||||||||| ||||||||||||  |||||||| ||||||    
T  30191083 ttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgacat 30191146  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 45071532 - 45071439
Alignment:
Q  65 ttagggttgtttgtattgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacat 158  Q
    ||||| ||||||| |||| ||||  ||| |||||||  || ||||| || |||  || |||||||||||||||||||| |||||||| ||||||    
T  45071532 ttaggtttgtttggattggcttatctgaacttatctaatgacataaaaaattgggaggctgtttcggagagcttatgaaaacaacttatgacat 45071439  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 228
Target Start/End: Complemental strand, 29659453 - 29659344
Alignment:
Q  119 aagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgttttcttcttattttgata--ctctctaagacaacttatgaaaacaat 216  Q
    ||||||| || |||||| |||||| |||| ||| |||| | ||  ||||||||||||  |||||||  |||  |||||||||| |||||||||||||||     
T  29659453 aagactggtttggagagattatgaaaacagcttatgacgtatc--taagttgttttcagcttatttatataaactctctaagataacttatgaaaacaac 29659356  T
Q  217 ttataacttgta 228  Q
    ||||||||||||    
T  29659355 ttataacttgta 29659344  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 4619824 - 4619780
Alignment:
Q  106 cataagaacttgcaagactgtttcggagagcttatgataacaact 150  Q
    |||||| |||||||| ||||||| ||||||||||||| |||||||    
T  4619824 cataagcacttgcaacactgtttgggagagcttatgaaaacaact 4619780  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 36646300 - 36646456
Alignment:
Q  71 ttgtttgtattgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttg 170  Q
    ||||||| || |||||| || | | ||||| |||||||| | ||||| |||||| ||| ||||||||||||  ||| |||| || ||| ||  |||| ||    
T  36646300 ttgtttggatcgacttatttaagcatatctattggcataggcacttgtaagactatttgggagagcttatggaaaccacttatggcatgtccataagctg 36646399  T
Q  171 ttttcttcttattttgat--actctctaagacaacttatgaaaacaatttataactt 225  Q
    ||||| ||||||||  ||  |||||||| || | ||||||||||||| |||||||||    
T  36646400 ttttcatcttatttctataaactctctaggatagcttatgaaaacaagttataactt 36646456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 45590803 - 45590729
Alignment:
Q  71 ttgtttgtattgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagagcttatgataa 145  Q
    ||||||| ||||||||  |||| |||||||  | ||||||| |||||  ||||||||| ||||||||||||||||    
T  45590803 ttgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatgataa 45590729  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 37273282 - 37273173
Alignment:
Q  75 ttgtattgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgtttt 174  Q
    |||| ||| |||| |||| ||||| | || ||||||| ||| |  ||||||||| ||||||||||||  |||||||| |||||| ||  |||||||||||    
T  37273282 ttgtgttggcttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgtttt 37273183  T
Q  175 cttcttattt 184  Q
    |  |||||||    
T  37273182 caacttattt 37273173  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 2996676 - 2996569
Alignment:
Q  120 agactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgttttcttcttattttgata--ctctctaagacaacttatgaaaacaatt 217  Q
    |||||||||  |||||||||||| |||||||| |||||| ||  |||| | |||||  |||||||| |||  ||||| |||| | ||||||||||||| |    
T  2996676 agactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaact 2996577  T
Q  218 tataactt 225  Q
    ||||||||    
T  2996576 tataactt 2996569  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 27123304 - 27123383
Alignment:
Q  105 gcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgttttcttcttattt 184  Q
    ||||||| |||||  |||||||||  |||||||||||  |||||||| |||||| || |||||||||||||  |||||||    
T  27123304 gcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttattt 27123383  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 185
Target Start/End: Original strand, 33534096 - 33534201
Alignment:
Q  80 ttgacttaattgaccttatctcttggcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgttttcttct 179  Q
    |||||||| |||| |||||||  || |||||| |||||  ||| | |||  |||||||||||| ||||| ||||||||| ||  ||||||||||||  ||    
T  33534096 ttgacttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagct 33534195  T
Q  180 tatttt 185  Q
    ||||||    
T  33534196 tatttt 33534201  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 2460103 - 2460182
Alignment:
Q  105 gcataagaacttgcaagactgtttcggagagcttatgataacaacttgtgacatttcgttaagttgttttcttcttattt 184  Q
    ||||||| |||||  |||||||||  |||||||||||  |||||||| |||||| || |||||||||||||  |||||||    
T  2460103 gcataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttattt 2460182  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 40667557 - 40667488
Alignment:
Q  74 tttgtattgacttaattgaccttatct-cttggcataagaacttgcaagactgtttcggagagcttatga 142  Q
    ||||||||| |||| |||||||||||| ||||||||||| |||||  ||| ||||| | |||||||||||    
T  40667557 tttgtattgtcttatttgaccttatctacttggcataagcacttgtgagattgtttggaagagcttatga 40667488  T

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