View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_49 (Length: 274)
Name: NF4908_low_49
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 26289602 - 26289849
Alignment:
| Q |
15 |
acttactattattaaaagttgaaatctgtgatacagtctgattaatttcatatctatgtatgtctcacactcactcacacctgtgctgattatggaaaaa |
114 |
Q |
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| T |
26289602 |
acttactattattaaaagttgaaatctgtgatacagtccgattaatttcatatctatgtatgtctcacactcactcac--ctgtgctggttatggaaaaa |
26289699 |
T |
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| Q |
115 |
caaaggttctttattttcattatcattttctaactgcagttacagttttaattagtttctttcttttacaattaatttctcttcaatttggttttcgata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
26289700 |
caaaggttctttattttcattatcattttctaactgcagttacagttttaattagtttctttcttttacaattaatttcacttcaatttggttttcaata |
26289799 |
T |
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| Q |
215 |
ggggtccaccgagatgtttaccctgatgttgtcaaatttgagcttctgtg |
264 |
Q |
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| T |
26289800 |
ggggtccaccgagatgtttaccctgatgttgtaaaatttgagcttgtgtg |
26289849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 92 - 257
Target Start/End: Original strand, 26312526 - 26312694
Alignment:
| Q |
92 |
cacctgtgctgattatggaaaaacaaaggttctttattttcattatcatt---ttctaactgcagttacagttttaattagtttctttcttttacaatta |
188 |
Q |
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| T |
26312526 |
cacctgtgctgattatggaaaaacaaaggttctttatcttcattatcattattttctaactgcaattacaggtttaattagtttctttctttcacaatta |
26312625 |
T |
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| Q |
189 |
atttctcttcaatttggttttcgataggggtccaccgagatgtttaccctgatgttgtcaaatttgagc |
257 |
Q |
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| T |
26312626 |
atttctcttcaatttagtttccaataggggtccaccgagatgtttatcctgatgttgtcaaattagagc |
26312694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 7291311 - 7291408
Alignment:
| Q |
158 |
agttttaattagtttctttcttttacaattaatttctcttcaatttggttttcgataggggtccaccgagatgtttaccctgatgttgtcaaatttgagc |
257 |
Q |
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|||||||||||||||||||| | |||||||| ||||||||||| |||||| | || ||| ||| |||||||||||||| |||||||||||| |||| |
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| T |
7291311 |
agttttaattagtttctttc----aaaattaattcctcttcaattttgttttcacttggtgtctacctagatgtttaccctgctgttgtcaaattagagc |
7291406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 7295050 - 7295134
Alignment:
| Q |
174 |
tttcttttacaattaatttctcttcaatttggttttcgataggggtccaccgagatgtttaccctgatgttgtcaaatttgagct |
258 |
Q |
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| T |
7295050 |
tttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagct |
7295134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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