View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_low_51 (Length: 270)

Name: NF4908_low_51
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_low_51
NF4908_low_51
[»] chr6 (15 HSPs)
chr6 (18-258)||(31680543-31680783)
chr6 (21-79)||(12654079-12654137)
chr6 (27-79)||(20028482-20028534)
chr6 (27-79)||(29285036-29285088)
chr6 (21-81)||(20845293-20845353)
chr6 (21-72)||(1106628-1106679)
chr6 (21-72)||(15589886-15589937)
chr6 (21-79)||(12481140-12481198)
chr6 (21-79)||(20496480-20496538)
chr6 (21-78)||(14782916-14782973)
chr6 (21-82)||(31748241-31748302)
chr6 (27-84)||(34020885-34020942)
chr6 (21-81)||(8978517-8978577)
chr6 (21-73)||(15470017-15470069)
chr6 (21-81)||(16913610-16913670)
[»] chr1 (18 HSPs)
chr1 (21-80)||(10599165-10599224)
chr1 (21-82)||(13691532-13691593)
chr1 (21-79)||(15312388-15312446)
chr1 (21-79)||(28399105-28399163)
chr1 (21-82)||(34566965-34567026)
chr1 (21-81)||(33125581-33125641)
chr1 (21-72)||(15391013-15391064)
chr1 (21-76)||(40862595-40862650)
chr1 (27-82)||(48003496-48003551)
chr1 (29-79)||(8960791-8960841)
chr1 (27-77)||(10188659-10188709)
chr1 (21-82)||(1768211-1768272)
chr1 (21-82)||(2350906-2350967)
chr1 (27-72)||(3233080-3233125)
chr1 (22-79)||(32878995-32879052)
chr1 (21-82)||(38646868-38646929)
chr1 (21-82)||(44562518-44562579)
chr1 (27-79)||(34334871-34334923)
[»] chr3 (20 HSPs)
chr3 (21-79)||(2148042-2148100)
chr3 (21-79)||(44984634-44984692)
chr3 (21-79)||(3312729-3312787)
chr3 (27-79)||(41868107-41868159)
chr3 (21-78)||(49627873-49627930)
chr3 (21-78)||(55455165-55455222)
chr3 (21-72)||(1074663-1074714)
chr3 (21-72)||(14585771-14585822)
chr3 (21-72)||(54706501-54706552)
chr3 (21-79)||(41598245-41598303)
chr3 (21-82)||(1165165-1165226)
chr3 (21-82)||(22286520-22286581)
chr3 (21-82)||(28995078-28995139)
chr3 (21-78)||(30156059-30156116)
chr3 (21-78)||(31462524-31462581)
chr3 (21-82)||(33076569-33076630)
chr3 (19-76)||(34960695-34960752)
chr3 (35-79)||(550484-550528)
chr3 (30-82)||(37051878-37051930)
chr3 (16-72)||(39610519-39610575)
[»] chr4 (14 HSPs)
chr4 (21-79)||(6082200-6082258)
chr4 (21-78)||(26742233-26742290)
chr4 (21-75)||(47466208-47466262)
chr4 (21-78)||(51152418-51152475)
chr4 (27-79)||(26623980-26624032)
chr4 (28-79)||(6882249-6882300)
chr4 (21-72)||(39523719-39523770)
chr4 (30-79)||(9229701-9229750)
chr4 (21-82)||(9549723-9549784)
chr4 (21-82)||(9662137-9662198)
chr4 (21-78)||(22757388-22757445)
chr4 (21-82)||(34115425-34115486)
chr4 (21-78)||(36124118-36124175)
chr4 (27-79)||(31994315-31994367)
[»] chr8 (10 HSPs)
chr8 (22-79)||(32778742-32778799)
chr8 (27-79)||(6219886-6219938)
chr8 (21-76)||(10338600-10338655)
chr8 (21-76)||(19489118-19489173)
chr8 (27-82)||(27534187-27534242)
chr8 (21-72)||(39067459-39067510)
chr8 (27-72)||(37128263-37128308)
chr8 (27-75)||(10632907-10632955)
chr8 (21-81)||(16996658-16996718)
chr8 (21-81)||(18190620-18190680)
[»] chr5 (19 HSPs)
chr5 (22-79)||(11734607-11734664)
chr5 (21-72)||(39179606-39179657)
chr5 (27-72)||(980796-980841)
chr5 (27-79)||(14535185-14535237)
chr5 (27-79)||(29098082-29098134)
chr5 (27-79)||(39532116-39532168)
chr5 (21-72)||(2555111-2555162)
chr5 (21-72)||(6281353-6281404)
chr5 (21-72)||(17699862-17699913)
chr5 (21-72)||(17732147-17732198)
chr5 (21-72)||(18654091-18654142)
chr5 (21-72)||(26293919-26293970)
chr5 (21-72)||(26294835-26294886)
chr5 (21-84)||(39416027-39416090)
chr5 (21-72)||(39531173-39531224)
chr5 (27-76)||(27241360-27241409)
chr5 (21-78)||(32347484-32347541)
chr5 (21-69)||(3079095-3079143)
chr5 (20-72)||(17331637-17331689)
[»] scaffold1379 (1 HSPs)
scaffold1379 (27-79)||(848-900)
[»] chr2 (27 HSPs)
chr2 (21-81)||(5071139-5071199)
chr2 (27-79)||(15920161-15920213)
chr2 (27-79)||(19904795-19904847)
chr2 (21-72)||(34471269-34471320)
chr2 (21-79)||(4604077-4604135)
chr2 (21-78)||(7072735-7072792)
chr2 (21-73)||(23256399-23256451)
chr2 (21-72)||(34416524-34416575)
chr2 (21-72)||(36868317-36868368)
chr2 (21-79)||(11798298-11798356)
chr2 (21-79)||(31271663-31271721)
chr2 (21-82)||(2251116-2251177)
chr2 (21-82)||(3465213-3465274)
chr2 (21-82)||(3603269-3603330)
chr2 (21-82)||(5930707-5930768)
chr2 (23-72)||(18089177-18089226)
chr2 (21-82)||(18141250-18141311)
chr2 (21-82)||(25516776-25516837)
chr2 (21-82)||(25771729-25771790)
chr2 (21-82)||(36508213-36508274)
chr2 (21-82)||(43567157-43567218)
chr2 (21-82)||(44167480-44167541)
chr2 (24-76)||(6431181-6431233)
chr2 (27-79)||(17056244-17056296)
chr2 (27-79)||(17068691-17068743)
chr2 (27-79)||(17095261-17095313)
chr2 (27-79)||(25068143-25068195)
[»] chr7 (20 HSPs)
chr7 (21-80)||(6646370-6646429)
chr7 (21-78)||(5684658-5684715)
chr7 (21-78)||(5709708-5709765)
chr7 (21-82)||(8611393-8611454)
chr7 (21-78)||(37375816-37375873)
chr7 (21-78)||(46025816-46025873)
chr7 (21-81)||(29804448-29804508)
chr7 (21-72)||(22747270-22747321)
chr7 (21-72)||(42644964-42645015)
chr7 (21-79)||(38273191-38273249)
chr7 (30-76)||(44482652-44482698)
chr7 (21-79)||(45482357-45482415)
chr7 (19-72)||(32643277-32643330)
chr7 (21-78)||(36719322-36719379)
chr7 (21-82)||(40775551-40775612)
chr7 (21-82)||(47750018-47750079)
chr7 (21-82)||(49167209-49167270)
chr7 (16-76)||(3266682-3266742)
chr7 (27-71)||(33971953-33971997)
chr7 (21-81)||(42490988-42491048)
[»] scaffold0112 (1 HSPs)
scaffold0112 (21-82)||(25281-25342)
[»] scaffold0045 (1 HSPs)
scaffold0045 (21-82)||(9427-9488)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 31680783 - 31680543
Alignment:
Q  18 acttccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatcatttacaacatcgacgatgccaaagtcattaatct 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31680783 acttccatattaatagcataaaacggcagaatacatatatttacaaatataactatattcaaatcatttacaacatcgacgatgccaaagtcattaatct 31680684  T
Q  118 cttgaattatgttttatgttcacaaggtatgaacacactccaaaaaattctgggctaatgatataataacttttcatgctatgctatcatcaatcatcac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31680683 cttgaattatgttttatgttcacaaggtatgaacacactccaaaaaattctgggctaatgatataataacttttcatactatgctatcatcaatcatcac 31680584  T
Q  218 atcaaaaattgtattttattccatatatctcacatgtccta 258  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  31680583 atcaagaattgtattttattccatctatctcacatgtccta 31680543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 12654079 - 12654137
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| |||||||||||||||| || |||||||||  ||||||||||||||||||||||    
T  12654079 tccatgttaatagcataaaacgacaaaatacatatgcctacaaatatgactatattcaa 12654137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 20028482 - 20028534
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||| |||||||||||||||| ||||  ||||||||||||||||||||||    
T  20028482 ttaatagtataaaacggcagaatatatatgcctacaaatatgactatattcaa 20028534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 29285088 - 29285036
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||| |||||||||| ||| |||||||| ||||||||||||||||||||||    
T  29285088 ttaataacataaaacggaagagtacatatagctacaaatatgactatattcaa 29285036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 20845353 - 20845293
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| |||||||||||||||| || | |||| || |||||||||||||||||||| ||||    
T  20845353 tccatgttaatagcataaaacgacaaagtacaaatgtctacaaatatgactatatttaaat 20845293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 1106628 - 1106679
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  1106628 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 1106679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 15589886 - 15589937
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | ||| |||| |||||||||||||||    
T  15589886 tccatgttaatagcataaaacggcaaagtacgtatacctacaaatatgacta 15589937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 12481140 - 12481198
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| |||||||||||||||||||   ||| |||  ||||||||||||||||||||||    
T  12481140 tccatgttaatagcataaaacggcaaggtacctatgcctacaaatatgactatattcaa 12481198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 20496538 - 20496480
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||||||||| | |||| |   ||||| ||||||||||||||||    
T  20496538 tccatattaatagcataaaacggcaaagtacaaaagcctacacatatgactatattcaa 20496480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 14782916 - 14782973
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| |||||||||||||| |||| | ||| |||  |||||||||||||||||||||    
T  14782916 tccatgttaatagcataaaatggcaaagtacctatgcctacaaatatgactatattca 14782973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 31748302 - 31748241
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  31748302 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 31748241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 34020942 - 34020885
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatcat 84  Q
    |||||||||||||||| || | ||||||   ||||||||||||||||||| |||||||    
T  34020942 ttaatagcataaaacgacaaagtacataagcctacaaatatgactatattaaaatcat 34020885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 8978517 - 8978577
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| || ||| ||||||||| || | |||||||  ||||||||||||||||||||||||    
T  8978517 tccatgttcataacataaaacgacatagtacatatgcctacaaatatgactatattcaaat 8978577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 15470017 - 15470069
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactat 73  Q
    ||||| |||||| |||||||||| ||| |||||||  ||||||||||||||||    
T  15470017 tccatgttaatatcataaaacggtagagtacatattcctacaaatatgactat 15470069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 16913670 - 16913610
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| ||||    
T  16913670 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaat 16913610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 10599224 - 10599165
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaa 80  Q
    ||||||||||||||||| |||| || | ||||||||||||||||||||||||||||||||    
T  10599224 tccatattaatagcatagaacgacaaagtacatatatctacaaatatgactatattcaaa 10599165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 13691532 - 13691593
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| ||||||||   ||||||||||||||||||| |||||    
T  13691532 tccatgttaatagcataaaacggcaaaatacataagcctacaaatatgactatattaaaatc 13691593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 15312388 - 15312446
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| |||||| |||||||||||| |||||||||  |||||||||||||||| |||||    
T  15312388 tccatgttaataacataaaacggcataatacatatggctacaaatatgactatgttcaa 15312446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 28399105 - 28399163
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| ||||||||||||||||||| | |||||||   |||||||||||||||||||||    
T  28399105 tccatgttaatagcataaaacggcaaagtacatatgcttacaaatatgactatattcaa 28399163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 34567026 - 34566965
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | ||||||   ||||||||||||||||||| |||||    
T  34567026 tccatgttaatagcataaaacggcaaagtacataagcctacaaatatgactatattaaaatc 34566965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 33125581 - 33125641
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| |||||||||||||||| || ||||  ||| |||| ||||||||||||||||||||    
T  33125581 tccatgttaatagcataaaacgacaaaataattatgtctataaatatgactatattcaaat 33125641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 15391013 - 15391064
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||||||||||||||||||||||| | ||| |||  |||||||||||||||    
T  15391013 tccatattaatagcataaaacggcaaagtacctatgcctacaaatatgacta 15391064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 40862595 - 40862650
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    ||||| |||||||||||||||| |||| ||| |||  |||||||||||||||||||    
T  40862595 tccatgttaatagcataaaacgacagagtacttatgcctacaaatatgactatatt 40862650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 48003551 - 48003496
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||||||||||||||||| |||||||||   || || ||||||||||||||||||    
T  48003551 ttaatagcataaaacggcaaaatacatatgaatataattatgactatattcaaatc 48003496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 8960841 - 8960791
Alignment:
Q  29 aatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||||||||| |||||| ||| ||| |||| ||||||||||||||||||    
T  8960841 aatagcataaaatggcagagtacgtatgtctataaatatgactatattcaa 8960791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 10188659 - 10188709
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattc 77  Q
    ||||||||||||||| |  || |||||||| ||||||||||||||||||||    
T  10188659 ttaatagcataaaacagaggagtacatatacctacaaatatgactatattc 10188709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 1768272 - 1768211
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  |||||||||||||||| || |||||    
T  1768272 tccatgttaatagcataaaacggcaaagtacaaatgcctacaaatatgactatgtttaaatc 1768211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 2350967 - 2350906
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| |   ||||||||||||||||||| |||||    
T  2350967 tccatgttaatagcataaaacggcaaagtacaaaagcctacaaatatgactatattaaaatc 2350906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 3233125 - 3233080
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||||||||||||||||| | |||||||  |||||||||||||||    
T  3233125 ttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 3233080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 32879052 - 32878995
Alignment:
Q  22 ccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||| |||||||||||||||| || | ||| |||  ||||||||||||||||||||||    
T  32879052 ccatgttaatagcataaaacgacaaagtacttatgcctacaaatatgactatattcaa 32878995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 38646929 - 38646868
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| |||||||||||||| |||| | |||| || |||||| ||||||||||||| |||||    
T  38646929 tccatgttaatagcataaaaaggcaaagtacaaatgtctacacatatgactatatttaaatc 38646868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 44562518 - 44562579
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| |||||||||||||||||||  ||||| ||  ||||| ||||||||||||| |||||    
T  44562518 tccatgttaatagcataaaacggcaagatacaaatgcctacacatatgactatatttaaatc 44562579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 34334871 - 34334923
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||| | ||||| |||  |||||||||||| |||||||||    
T  34334871 ttaatagcataaaacggtataatacttatgcctacaaatatgattatattcaa 34334923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 2148100 - 2148042
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||||||||| | |||| || |||||||||||||||||||||||    
T  2148100 tccatattaatagcataaaacggcaaagtacaaatgtctacaaatatgactatattcaa 2148042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 44984634 - 44984692
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||| ||||||| | ||| |||||||||||||||||||||||||||||||    
T  44984634 tccatattaatagtataaaacagaagagtacatatatctacaaatatgactatattcaa 44984692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 3312787 - 3312729
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| ||||||||||||||||||| ||||| |||  ||||||||||||||||||||||    
T  3312787 tccatgttaatagcataaaacggcaaaatacctatgcctacaaatatgactatattcaa 3312729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 41868107 - 41868159
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||||||||||    
T  41868107 ttaatagcataaaacggcaaagtacctatgtctacaaatatgactatattcaa 41868159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 49627873 - 49627930
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| | ||| |||  |||||||||||||||||||||    
T  49627873 tccatgttaatagcataaaacggcaaagtacctatgcctacaaatatgactatattca 49627930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 55455222 - 55455165
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| | |||||||   ||||||||||||||||||||    
T  55455222 tccatgttaatagcataaaacggcaaagtacatatgcttacaaatatgactatattca 55455165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 1074663 - 1074714
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | || |||| ||||||||||||||||    
T  1074663 tccatgttaatagcataaaacggcaaagtaaatatgtctacaaatatgacta 1074714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 14585822 - 14585771
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  14585822 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 14585771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 54706501 - 54706552
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  54706501 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 54706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 41598245 - 41598303
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| |||||| ||||||| |||||| |||||||  |||||||||||| |||||||||    
T  41598245 tccattttaataacataaaatggcagagtacatatgcctacaaatatgattatattcaa 41598303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 1165165 - 1165226
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | ||||  | |||||| ||||||||||||| |||||    
T  1165165 tccatgttaatagcataaaacggcaaagtacaattgtctacacatatgactatatttaaatc 1165226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 22286520 - 22286581
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  22286520 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 22286581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 28995078 - 28995139
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  28995078 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 28995139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 30156059 - 30156116
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| |||||||||||||||| || | || ||||  |||||||||||||||||||||    
T  30156059 tccatgttaatagcataaaacgacaaagtatatatgcctacaaatatgactatattca 30156116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 31462524 - 31462581
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||| ||||||||||| | |||||||  |||||||||||| ||||||||    
T  31462524 tccatgttaatagaataaaacggcaaagtacatatgcctacaaatatgattatattca 31462581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 33076630 - 33076569
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  | ||| |||||||||||||||||||    
T  33076630 tccatgttaatagcataaaacggcaaagtacaaatgccaacacatatgactatattcaaatc 33076569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 34960695 - 34960752
Alignment:
Q  19 cttccatattaatagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    ||||||| |||||| |||||||||||| ||||| |||  |||||||||||||| ||||    
T  34960695 cttccatgttaataacataaaacggcaaaatacttatgcctacaaatatgactgtatt 34960752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 550528 - 550484
Alignment:
Q  35 ataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||| ||| ||||||| |||||| ||||||||||||||||    
T  550528 ataaaacggtagagtacatatgtctacatatatgactatattcaa 550484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 37051930 - 37051878
Alignment:
Q  30 atagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    |||||||||||||||| | ||||||   ||||||||||||||||||| |||||    
T  37051930 atagcataaaacggcaaagtacataagcctacaaatatgactatattaaaatc 37051878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 39610575 - 39610519
Alignment:
Q  16 tcacttccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    |||| ||||| ||||||||||||||||||| | ||| |||  |||||||||||||||    
T  39610575 tcacatccatgttaatagcataaaacggcaaagtacttatgcctacaaatatgacta 39610519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 6082200 - 6082258
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| ||||||||||||||||||| | |||||||  ||||||||||||||||||||||    
T  6082200 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaa 6082258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 26742233 - 26742290
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| |||| ||||  |||||||||||||||||||||    
T  26742233 tccatgttaatagcataaaacggcaaaatatatatgcctacaaatatgactatattca 26742290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 47466262 - 47466208
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatat 75  Q
    ||||| ||||||||||||||||||| | |||||| | ||||||||||||||||||    
T  47466262 tccatgttaatagcataaaacggcaaagtacataaacctacaaatatgactatat 47466208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 51152475 - 51152418
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| | ||||| |  |||||||||||||||||||||    
T  51152475 tccatgttaatagcataaaacggcaaagtacatttgcctacaaatatgactatattca 51152418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 26623980 - 26624032
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||| || | || ||||||||| |||||||||||||||||||||||    
T  26623980 ttaatagcatacaatgacataatacatatgtctacaaatatgactatattcaa 26624032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 6882300 - 6882249
Alignment:
Q  28 taatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||||||||||||||| | ||  ||| |||||||||||||||||||||||    
T  6882300 taatagcataaaacggcaaagtatttatgtctacaaatatgactatattcaa 6882249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 39523770 - 39523719
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  39523770 tccatgttaatagcataaaacggcaaattacatatgcctacaaatatgacta 39523719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 9229701 - 9229750
Alignment:
Q  30 atagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||| ||| |||| ||||||| ||||||||||| |||||||||||    
T  9229701 atagcataacacgacagagtacatatgtctacaaatataactatattcaa 9229750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 9549784 - 9549723
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| || |||| | ||||||||||||| |||||    
T  9549784 tccatgttaatagcataaaacggcaaagtacaaatgtctatacatatgactatatttaaatc 9549723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 9662198 - 9662137
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | ||||  | |||||| ||||||||||||| |||||    
T  9662198 tccatgttaatagcataaaacggcaaagtacaattgtctacacatatgactatatttaaatc 9662137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 22757445 - 22757388
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||  | ||| |||  |||||||||||||||||||||    
T  22757445 tccatgttaatagcataaaacggctaagtacctatgcctacaaatatgactatattca 22757388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 34115425 - 34115486
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  34115425 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 34115486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 36124118 - 36124175
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||| ||||| |  ||||||  |||||||||||||||||||||    
T  36124118 tccatgttaatagcataaatcggcaaagcacatatgcctacaaatatgactatattca 36124175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 31994367 - 31994315
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||| | |||||||   ||||||||||| |||||||||    
T  31994367 ttaatagcataaaacggcaaagtacatatgcgtacaaatatgattatattcaa 31994315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 32778742 - 32778799
Alignment:
Q  22 ccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||||||||||||||||||||| | ||| |||  ||||||||||||||||||||||    
T  32778742 ccatattaatagcataaaacggcaaagtacctatggctacaaatatgactatattcaa 32778799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 6219886 - 6219938
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||||||||||  | |||| |||||||||||||||||||||||||||||||    
T  6219886 ttaatagcataaagtgacagagtacatatatctacaaatatgactatattcaa 6219938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 10338600 - 10338655
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    ||||| ||||||||||||||||||| | ||| |||  |||||||||||||||||||    
T  10338600 tccatgttaatagcataaaacggcaaagtacctatgcctacaaatatgactatatt 10338655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 19489173 - 19489118
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    |||||||||||||||||||||| |  |||||||||| | | |||||||||||||||    
T  19489173 tccatattaatagcataaaacgtcccaatacatatacccataaatatgactatatt 19489118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 27534187 - 27534242
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||||||||||||||||| | ||||||   ||||||||||||||||||| |||||    
T  27534187 ttaatagcataaaacggcaaagtacataagcctacaaatatgactatattaaaatc 27534242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 39067459 - 39067510
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  39067459 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 39067510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 37128263 - 37128308
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||||||||||||||||| | |||||||  |||||||||||||||    
T  37128263 ttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 37128308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 10632907 - 10632955
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatat 75  Q
    ||||||||||||||||| ||| ||||||| |||| |||| |||||||||    
T  10632907 ttaatagcataaaacggtagattacatatgtctaaaaatctgactatat 10632955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 16996658 - 16996718
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| ||||    
T  16996658 tccatgttaatagcataaaacggcaaagtacaaatgcctacatatatgactatatttaaat 16996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 18190620 - 18190680
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    |||||||||||||||||||||| || | |||| |   ||||||||||||||||||| ||||    
T  18190620 tccatattaatagcataaaacgacaaagtacacaagcctacaaatatgactatattaaaat 18190680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 11734607 - 11734664
Alignment:
Q  22 ccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||| ||||||||||||||||||| | |||||||  ||||||||||||||||||||||    
T  11734607 ccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaa 11734664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 39179606 - 39179657
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| |||||||||||||||| || | ||||||||||||||||||||||||    
T  39179606 tccatgttaatagcataaaacgacaaagtacatatatctacaaatatgacta 39179657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 980796 - 980841
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||    
T  980796 ttaatagcataaaacggcaaaatacatatgcctacaaatatgacta 980841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 14535237 - 14535185
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||| ||||||||||||| ||||||| |||| |||||||| |||||||||    
T  14535237 ttaataggataaaacggcagagtacatatgtctataaatatgattatattcaa 14535185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 29098134 - 29098082
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||||||||||||||||   |||||||  ||||||||||||||||||||||    
T  29098134 ttaatagcataaaacggcaaggtacatatgcctacaaatatgactatattcaa 29098082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 39532116 - 39532168
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||||||||||||||  || |||||||  ||||||||||||||||||||||    
T  39532116 ttaatagcataaaacggtcgagtacatatgcctacaaatatgactatattcaa 39532168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 2555111 - 2555162
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| |||||||| |||||||||| |||||||||  |||||||||||||||    
T  2555111 tccatgttaatagcgtaaaacggcaaaatacatatgcctacaaatatgacta 2555162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 6281404 - 6281353
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||| ||| |||||||||  |||||||||||||||    
T  6281404 tccatgttaatagcataaaacagcaaaatacatatgcctacaaatatgacta 6281353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 17699913 - 17699862
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  17699913 tccatgttaatagcataaaacggcaaagtacctatgtctacaaatatgacta 17699862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 17732147 - 17732198
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  17732147 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 17732198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 18654142 - 18654091
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| ||||| |||  |||||||||||||||    
T  18654142 tccatgttaatagcataaaacggcaaaatacttatgcctacaaatatgacta 18654091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 26293970 - 26293919
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||||||||||||||||||||||| | ||| |||  |||||||||||||||    
T  26293970 tccatattaatagcataaaacggcaaagtacttatgcctacaaatatgacta 26293919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 26294835 - 26294886
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| ||||| |||  |||||||||||||||    
T  26294835 tccatgttaatagcataaaacggcaaaatacttatgcctacaaatatgacta 26294886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 39416027 - 39416090
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatcat 84  Q
    ||||| ||||||||| |||| | |||| |||||||  ||||||||||||||||||||| |||||    
T  39416027 tccattttaatagcaaaaaatgacagagtacatatgcctacaaatatgactatattcatatcat 39416090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 39531173 - 39531224
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  39531173 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 39531224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 27241409 - 27241360
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    ||||||||||||||||||| ||||| ||   |||||||||||||||||||    
T  27241409 ttaatagcataaaacggcaaaatacctaggcctacaaatatgactatatt 27241360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 32347484 - 32347541
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| | ||  |||  |||||||||||||||||||||    
T  32347484 tccatgttaatagcataaaacggcaaagtagttatgcctacaaatatgactatattca 32347541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 3079095 - 3079143
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatga 69  Q
    ||||| |||||| |||||||||||| |||||||||  ||||||||||||    
T  3079095 tccatgttaataacataaaacggcaaaatacatatgcctacaaatatga 3079143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 17331689 - 17331637
Alignment:
Q  20 ttccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    |||||| |||||||||||||||||||  |||| |||  |||||||||||||||    
T  17331689 ttccatgttaatagcataaaacggcaagatacctatgcctacaaatatgacta 17331637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 848 - 900
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||||||||||    
T  848 ttaataacataaaacggcaaaatacttatgtctacaaatatgactatattcaa 900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 5071139 - 5071199
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| ||||||||||||||||||| ||||||||   ||||||||||||||||||| ||||    
T  5071139 tccatgttaatagcataaaacggcataatacataagcctacaaatatgactatattaaaat 5071199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 15920213 - 15920161
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||| | |||||||  ||||||||||||||||||||||    
T  15920213 ttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaa 15920161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 19904847 - 19904795
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||||||||    
T  19904847 ttaatagcataaaacggcagagtacatgtgtctacaaacatgactatattcaa 19904795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 34471320 - 34471269
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| |||||||||  |||||||||||||||    
T  34471320 tccatgttaatagcataaaacggcaaaatacatatgcctacaaatatgacta 34471269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 4604077 - 4604135
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| ||||||||||||||||||| ||||  |||  ||||||||||||||||||||||    
T  4604077 tccatgttaatagcataaaacggcaaaatatctatgcctacaaatatgactatattcaa 4604135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 7072735 - 7072792
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| | || ||||  |||||||||||||||||||||    
T  7072735 tccatgttaatagcataaaacggcaaagtatatatgcctacaaatatgactatattca 7072792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 23256399 - 23256451
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactat 73  Q
    ||||| |||||| |||||||||| ||| |||||||| ||||||||||||||||    
T  23256399 tccatgttaatatcataaaacggtagagtacatatacctacaaatatgactat 23256451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 34416524 - 34416575
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  34416524 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 34416575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 36868368 - 36868317
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  36868368 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 36868317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 11798298 - 11798356
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| |||||||||||||||| || | ||| |||  ||||||||||||||||||||||    
T  11798298 tccatgttaatagcataaaacgacaaagtacctatgcctacaaatatgactatattcaa 11798356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 31271721 - 31271663
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| |||||||||||||| |||| |||| ||||  |||||||||||||||| |||||    
T  31271721 tccatgttaatagcataaaatggcataatatatatgcctacaaatatgactatcttcaa 31271663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 2251116 - 2251177
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||| ||| | ||||||   ||||||||||||||||||| |||||    
T  2251116 tccatgttaatagcataaaactgcaaagtacataagcctacaaatatgactatattaaaatc 2251177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 3465274 - 3465213
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| |||||||||||||||| || | |||| || |||||| ||||||||||||| |||||    
T  3465274 tccatgttaatagcataaaacgacaaagtacaaatgtctacacatatgactatatttaaatc 3465213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 3603330 - 3603269
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  3603330 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 3603269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 5930768 - 5930707
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    |||||||||||||||||||||| || |||||| ||  ||||| ||||||| ||||| |||||    
T  5930768 tccatattaatagcataaaacgacaaaatacaaatgcctacacatatgaccatatttaaatc 5930707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 18089177 - 18089226
Alignment:
Q  23 catattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||||||||||||||||||||| ||||| |||  || ||||||||||||    
T  18089177 catattaatagcataaaacggcaaaatacctatgcctgcaaatatgacta 18089226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 18141250 - 18141311
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  18141250 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 18141311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 25516837 - 25516776
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  25516837 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 25516776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 25771790 - 25771729
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | ||||  | |||||| ||||||||||||| |||||    
T  25771790 tccatgttaatagcataaaacggcaaagtacaattgtctacacatatgactatatttaaatc 25771729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 36508274 - 36508213
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  36508274 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 36508213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 43567218 - 43567157
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  43567218 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 43567157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 44167480 - 44167541
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  44167480 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 44167541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 6431181 - 6431233
Alignment:
Q  24 atattaatagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    |||||||| ||||||||||||| | |||||||   ||||||||||||||||||    
T  6431181 atattaatcgcataaaacggcaaagtacatatgcatacaaatatgactatatt 6431233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 17056244 - 17056296
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||| | |||| |  |||||| ||||||||||||||||    
T  17056244 ttaatagcataaaacggcaaagtacaaaagtctacacatatgactatattcaa 17056296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 17068691 - 17068743
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||| | |||| |  |||||| ||||||||||||||||    
T  17068691 ttaatagcataaaacggcaaagtacaaaagtctacacatatgactatattcaa 17068743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 17095261 - 17095313
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||||||||||||||||| | |||| |  |||||| ||||||||||||||||    
T  17095261 ttaatagcataaaacggcaaagtacaaaagtctacacatatgactatattcaa 17095313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 25068195 - 25068143
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    |||||||||||||||||||   ||| |||  ||||||||||||||||||||||    
T  25068195 ttaatagcataaaacggcaaggtacctatgcctacaaatatgactatattcaa 25068143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 6646370 - 6646429
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaa 80  Q
    ||||| |||||||||||||| || ||| |||||||  |||||||||||||||||||||||    
T  6646370 tccatgttaatagcataaaatggtagagtacatatgcctacaaatatgactatattcaaa 6646429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5684715 - 5684658
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| | |||||||  ||| |||||||||||||||||    
T  5684715 tccatgttaatagcataaaacggcaaagtacatatgcctataaatatgactatattca 5684658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 5709765 - 5709708
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||| | |||||||  ||| |||||||||||||||||    
T  5709765 tccatgttaatagcataaaacggcaaagtacatatgcctataaatatgactatattca 5709708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 8611393 - 8611454
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||| ||||| ||||||||||||| |||||    
T  8611393 tccatgttaatagcataaaacggcaaagtacaaatacctacacatatgactatatttaaatc 8611454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 37375816 - 37375873
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| |||||||||||||||| || | |||||||  |||||||||||||||||||||    
T  37375816 tccatgttaatagcataaaacgacaaagtacatatgcctacaaatatgactatattca 37375873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 46025816 - 46025873
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| |||||||||||||||| || | |||||||  |||||||||||||||||||||    
T  46025816 tccatgttaatagcataaaacgacaaagtacatatgcctacaaatatgactatattca 46025873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29804448 - 29804508
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| ||||||||||||||||||| | ||||||   ||||||||||||||||||| ||||    
T  29804448 tccatgttaatagcataaaacggcaaagtacataagcctacaaatatgactatatttaaat 29804508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 22747270 - 22747321
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  22747270 tccatgttaatagcataaaacggcaaagtacatatgcctacaaatatgacta 22747321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 42645015 - 42644964
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||| ||||||||||||||||||| | |||||||  |||||||||||||||    
T  42645015 tccatgttaatagcataaaacggcaaattacatatgcctacaaatatgacta 42644964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 38273249 - 38273191
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| ||||||||||||||| ||| | |||||||  | ||||||||||||||||||||    
T  38273249 tccatgttaatagcataaaacagcaaagtacatatgccaacaaatatgactatattcaa 38273191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 44482652 - 44482698
Alignment:
Q  30 atagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    |||||||||||||||| | |||||||  |||||||||||||||||||    
T  44482652 atagcataaaacggcaaagtacatatgcctacaaatatgactatatt 44482698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 45482415 - 45482357
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaa 79  Q
    ||||| |||||||||||||||| || | ||  |||| ||||||||||||||||||||||    
T  45482415 tccatgttaatagcataaaacgacaaagtatctatacctacaaatatgactatattcaa 45482357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 32643330 - 32643277
Alignment:
Q  19 cttccatattaatagcataaaacggcagaatacatatatctacaaatatgacta 72  Q
    ||||||| |||||||||||||||||||  |||| |||  |||||||||||||||    
T  32643330 cttccatgttaatagcataaaacggcaagatacttatgcctacaaatatgacta 32643277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 36719322 - 36719379
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattca 78  Q
    ||||| ||||||||||||||||||  | ||| |||  |||||||||||||||||||||    
T  36719322 tccatgttaatagcataaaacggcgaagtacttatgcctacaaatatgactatattca 36719379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 40775612 - 40775551
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | ||||  | |||||| ||||||||||||| |||||    
T  40775612 tccatgttaatagcataaaacggcaaagtacaattgtctacacatatgactatatttaaatc 40775551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 47750079 - 47750018
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  47750079 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 47750018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 49167270 - 49167209
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  49167270 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 49167209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 3266742 - 3266682
Alignment:
Q  16 tcacttccatattaatagcataaaacggcagaatacatatatctacaaatatgactatatt 76  Q
    |||| ||||| |||||||||||||||| || | ||| |||  |||||||||||||||||||    
T  3266742 tcacatccatgttaatagcataaaacgacaaagtacttatgcctacaaatatgactatatt 3266682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 33971997 - 33971953
Alignment:
Q  27 ttaatagcataaaacggcagaatacatatatctacaaatatgact 71  Q
    ||||||||||||||||| | |||||||| | ||||||||||||||    
T  33971997 ttaatagcataaaacggtataatacatacacctacaaatatgact 33971953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 42491048 - 42490988
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaat 81  Q
    ||||| ||||||||||||||||||| | |||| || |||||| |||| |||||||| ||||    
T  42491048 tccatgttaatagcataaaacggcaaagtacaaatgtctacacatattactatatttaaat 42490988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 25281 - 25342
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| |||||||||||||| |||| | ||||||   ||||||||||||||||||| |||||    
T  25281 tccatgttaatagcataaaatggcaaagtacataggcctacaaatatgactatattaaaatc 25342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 9427 - 9488
Alignment:
Q  21 tccatattaatagcataaaacggcagaatacatatatctacaaatatgactatattcaaatc 82  Q
    ||||| ||||||||||||||||||| | |||| ||  ||||| ||||||||||||| |||||    
T  9427 tccatgttaatagcataaaacggcaaagtacaaatgcctacacatatgactatatttaaatc 9488  T

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