View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_low_52 (Length: 268)
Name: NF4908_low_52
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_52 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 39567053 - 39566815
Alignment:
| Q |
11 |
cacagactatatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaaataataatgtacattattacaactaagtgagtttaatcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39567053 |
cacagactatatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaaataataatgtacattattacaactaagtgagtttaatcag |
39566954 |
T |
|
| Q |
111 |
ataaaaatgccaactgaggttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39566953 |
ataaaaatgccaactgaggttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgt |
39566854 |
T |
|
| Q |
211 |
tacttttggggtcccagttatggattgcattaagatact |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39566853 |
tacttttggggtcccagttatggattgcattaagatact |
39566815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 39562376 - 39562136
Alignment:
| Q |
11 |
cacagactatatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtgagtttaat |
107 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||| | | |||||||| || ||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
39562376 |
cacagactatattactgtaagcttgatgagtggtaggaaaattttgca-atgttttctaataataattaatgtacattatcacaacta-gtgagtttaat |
39562279 |
T |
|
| Q |
108 |
cagataaaaatgccaactgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattcta |
206 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39562278 |
tagataagaatgccaactgagggttctagttttattgatggctgccaattgaggccagcattcaagaactttagtcagtacaaaaaccttgcttattcta |
39562179 |
T |
|
| Q |
207 |
atgttacttttggggtcccagttatggattgcattaagatact |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562178 |
atgttacttttggggtcccagttatggattgcattaagatact |
39562136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 249
Target Start/End: Complemental strand, 39572498 - 39572326
Alignment:
| Q |
75 |
taatgtacattattacaactaagtgagtttaatcagataaaaatgccaactgagg-ttctagctttattgatggctgtcaattgataccagcattcaaga |
173 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||| |||||| ||||||||||| ||| | | || |||||||||||| |
|
|
| T |
39572498 |
taatgtacattatcacaacta-gtgagtttaattagataagaatgccaactgagggttctagttttattgatgg-tgt-agtggaagccagcattcaagg |
39572402 |
T |
|
| Q |
174 |
attttagtcagtacaaaaaccttgcttattctaatgttacttttggggtcccagttatggattgcattaagatact |
249 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39572401 |
gttttagttagtacaaaaaccttggttattctaatattacttttggtgtcccagttatggattgcattaagatact |
39572326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University