View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_55 (Length: 262)
Name: NF4908_low_55
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 51961834 - 51961620
Alignment:
| Q |
14 |
gagaatcaaaatcacacaacatatcaatttttgtaagtcaattttttctagaagtatatagtagtgtatatgttccctctctatatgatgaaaaatggat |
113 |
Q |
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| T |
51961834 |
gagaatcaaaatcacacaacatatcaatttttgtaagtcaattttttctagaagtatatagtagtgtatatgttccctctctatatgatgaaaaatgga- |
51961736 |
T |
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| Q |
114 |
atatatacaatacttatcattgagatttcagatgcatgttacttgtgaaatataattgacgtgcatttagtatacaaaacatgatttgtaaatgataggg |
213 |
Q |
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| T |
51961735 |
---tatacaatacttatcattg-------agatgcatgttacttgtgaaatataattgacgtgcatttagtatacaaaacatgatttgtaaatgataggg |
51961646 |
T |
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| Q |
214 |
gaccaaatgaagtatctggagaaggc |
239 |
Q |
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| T |
51961645 |
gaccaaatgaagtatcttgagcaggc |
51961620 |
T |
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