View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_59 (Length: 258)
Name: NF4908_low_59
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 25303877 - 25304115
Alignment:
| Q |
19 |
cctatctcataaccaaataaccattatcagacaccagttttataactttcttgactttacctctcgaaacagtggacatgtaaaagaaccttgtattcac |
118 |
Q |
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| T |
25303877 |
cctatctcataaccaaataaccattatcaaacaccagttttgtaactttcttgactttacctctagaaacagtggacatgtaaaagaaccttctattcac |
25303976 |
T |
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| Q |
119 |
gtccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcacacttctccgtatattcttctaaatga |
218 |
Q |
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| T |
25303977 |
gtccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcacacttctccatattttcttctaaatga |
25304076 |
T |
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| Q |
219 |
tttgtattcaaacgatcgggttgcctatgcttctcctct |
257 |
Q |
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| T |
25304077 |
tttgtattcacacgattaggttgcctatgcatttcctct |
25304115 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 7124523 - 7124477
Alignment:
| Q |
129 |
ttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctg |
175 |
Q |
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| T |
7124523 |
ttcaaccagtgcatttttgctctttgcttccaaaacgcctcctcctg |
7124477 |
T |
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