View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_low_61 (Length: 255)

Name: NF4908_low_61
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_low_61
NF4908_low_61
[»] chr8 (7 HSPs)
chr8 (1-236)||(17083710-17083945)
chr8 (19-130)||(22172041-22172154)
chr8 (4-133)||(6094663-6094794)
chr8 (4-133)||(21941205-21941336)
chr8 (4-133)||(15326738-15326869)
chr8 (4-133)||(15507107-15507238)
chr8 (4-91)||(28548587-28548674)
[»] scaffold0390 (2 HSPs)
scaffold0390 (4-133)||(6470-6601)
scaffold0390 (4-133)||(13486-13617)
[»] chr3 (19 HSPs)
chr3 (4-133)||(15341755-15341886)
chr3 (4-133)||(10572128-10572259)
chr3 (4-133)||(10578892-10579023)
chr3 (4-133)||(13249147-13249278)
chr3 (4-133)||(13517347-13517478)
chr3 (4-133)||(16482019-16482150)
chr3 (4-133)||(6110604-6110735)
chr3 (4-133)||(13211842-13211973)
chr3 (4-133)||(15357122-15357253)
chr3 (19-132)||(17136908-17137023)
chr3 (4-133)||(18520515-18520646)
chr3 (4-133)||(1647057-1647188)
chr3 (4-133)||(15600420-15600551)
chr3 (4-133)||(15606965-15607096)
chr3 (4-120)||(8491035-8491153)
chr3 (185-235)||(54385236-54385286)
chr3 (4-133)||(17780654-17780785)
chr3 (27-91)||(18523225-18523289)
chr3 (4-67)||(32056503-32056566)
[»] chr1 (7 HSPs)
chr1 (4-133)||(18532050-18532181)
chr1 (4-133)||(18252570-18252701)
chr1 (19-109)||(27310137-27310229)
chr1 (4-109)||(16358595-16358702)
chr1 (4-133)||(27130946-27131077)
chr1 (4-110)||(23507440-23507546)
chr1 (19-70)||(3855520-3855571)
[»] scaffold0234 (2 HSPs)
scaffold0234 (4-133)||(1857-1988)
scaffold0234 (4-133)||(10748-10879)
[»] scaffold0008 (1 HSPs)
scaffold0008 (4-133)||(229927-230058)
[»] chr7 (7 HSPs)
chr7 (4-133)||(15152983-15153114)
chr7 (4-133)||(29328324-29328455)
chr7 (4-133)||(11535598-11535729)
chr7 (4-133)||(11542516-11542647)
chr7 (4-133)||(12751366-12751497)
chr7 (4-133)||(18561538-18561669)
chr7 (4-129)||(12739076-12739201)
[»] chr6 (10 HSPs)
chr6 (4-133)||(11652263-11652394)
chr6 (4-133)||(17690976-17691107)
chr6 (4-133)||(27380788-27380919)
chr6 (4-133)||(27471171-27471302)
chr6 (4-133)||(29309430-29309561)
chr6 (4-133)||(29316389-29316520)
chr6 (4-133)||(17684005-17684136)
chr6 (4-133)||(27297169-27297300)
chr6 (4-133)||(16559008-16559139)
chr6 (19-74)||(25536788-25536843)
[»] chr4 (17 HSPs)
chr4 (4-133)||(8858707-8858838)
chr4 (4-133)||(18262752-18262883)
chr4 (4-133)||(55613223-55613354)
chr4 (4-131)||(18269613-18269742)
chr4 (4-135)||(26971003-26971136)
chr4 (4-114)||(5707860-5707972)
chr4 (4-114)||(5714488-5714600)
chr4 (19-133)||(19926296-19926412)
chr4 (4-129)||(869137-869264)
chr4 (4-133)||(10620869-10621000)
chr4 (4-133)||(10627948-10628079)
chr4 (4-133)||(26964180-26964311)
chr4 (4-133)||(28392670-28392801)
chr4 (19-133)||(8845758-8845874)
chr4 (4-133)||(4426151-4426282)
chr4 (6-71)||(10689821-10689886)
chr4 (6-71)||(10903461-10903526)
[»] chr2 (3 HSPs)
chr2 (4-133)||(21329784-21329915)
chr2 (4-91)||(18797046-18797133)
chr2 (19-133)||(22791394-22791510)
[»] scaffold0186 (1 HSPs)
scaffold0186 (4-133)||(25526-25657)
[»] chr5 (4 HSPs)
chr5 (4-133)||(19714034-19714165)
chr5 (4-133)||(24701758-24701889)
chr5 (4-133)||(24694994-24695125)
chr5 (4-133)||(19706755-19706886)
[»] scaffold0433 (1 HSPs)
scaffold0433 (19-133)||(7662-7778)
[»] scaffold0220 (1 HSPs)
scaffold0220 (4-115)||(18827-18940)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17083710 - 17083945
Alignment:
Q  1 caaaaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaacaa 100  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17083710 caaaaatgtctatgggttcaatattaaactagacagggatgacatggtgtatgccttgtgttcaatgtagacattaaagaaaaagggtaatcataaacaa 17083809  T
Q  101 tcattatcaaagaaatgttttgttagatcacataatannnnnnncacttaataatcattgtctataatattaaaggtatgtggcgtttaatttggaccca 200  Q
    |||||||||| |||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17083810 tcattatcaaggaaatgttttgttagatcacatcatatttttttcacttaataatcattgtctataatattaaaggtatgtggcgtttaatttggaccca 17083909  T
Q  201 ctgaaaaattggtccaacttggacccattaacttaa 236  Q
     |||||||||||||||||||||||||||||||||||    
T  17083910 ttgaaaaattggtccaacttggacccattaacttaa 17083945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 22172041 - 22172154
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  22172041 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatcacagaaag 22172140  T
Q  117 gttttgttagatca 130  Q
    ||||||| ||||||    
T  22172141 gttttgtcagatca 22172154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 6094663 - 6094794
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||| |||||| ||| |||  ||    
T  6094663 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaaggtaattatacacatgat 6094762  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  6094763 cattatcacagaaaggtttcgtcagatcacat 6094794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 21941205 - 21941336
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  21941205 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 21941304  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| |  |||||||||    
T  21941305 cattatcacagaaaggtttcgacagatcacat 21941336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15326738 - 15326869
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||  || ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |     
T  15326738 aaatgtctacgggcccaatattgaactagacaaggatggcacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgaa 15326837  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    ||||||||  ||||||||| || |||||||||    
T  15326838 cattatcacggaaatgtttcgtcagatcacat 15326869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15507107 - 15507238
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||  || ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |     
T  15507107 aaatgtctacgggcccaatattgaactagacaaggatggcacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgaa 15507206  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    ||||||||  ||||||||| || |||||||||    
T  15507207 cattatcacggaaatgtttcgtcagatcacat 15507238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 28548587 - 28548674
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaat 91  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||||||||    
T  28548587 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaat 28548674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 6601 - 6470
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    |||||||||||||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  6601 aaatgtctatgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 6502  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  6501 cattatcacagaaaggtttcgtcagatcacat 6470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 13617 - 13486
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||| |||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  13617 aaatgtctacgggcccaatattgaacaagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 13518  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  13517 cattatcacagaaaggtttcgtcagatcacat 13486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15341886 - 15341755
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  ||||||||||||| ||| |||  ||    
T  15341886 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggaaaaagggtaattatacacatgat 15341787  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  15341786 cattatcacagaaaggtttcgtcagatcacat 15341755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10572259 - 10572128
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10572259 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 10572160  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10572159 cattatcacagaaaggtttcgtcagatcacat 10572128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10579023 - 10578892
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10579023 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 10578924  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10578923 cattatcacagaaaggtttcgtcagatcacat 10578892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 13249147 - 13249278
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  ||||||||||||| ||| |||  ||    
T  13249147 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggaaaaagggtaattatacacatgat 13249246  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| |||||  ||| || |||||||||    
T  13249247 cattatcacagaaagatttcgtcagatcacat 13249278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 13517347 - 13517478
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  13517347 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 13517446  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  13517447 cattatcacagaaaggtttcgtcagatcacat 13517478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 16482150 - 16482019
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  16482150 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 16482051  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  16482050 cattatcacagaaaggtttcgtcagatcacat 16482019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 6110604 - 6110735
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||    | ||||||||||| ||| |||  ||    
T  6110604 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgggggcaaaagggtaattatacacatgat 6110703  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  6110704 cattatcacagaaaggtttcgtcagatcacat 6110735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 13211842 - 13211973
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  13211842 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 13211941  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| |||||  ||| || |||||||||    
T  13211942 cattatcacagaaagatttcgtcagatcacat 13211973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15357253 - 15357122
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15357253 aaatgtctacgggcccaatattgaactagacaaggatgacacggtttatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 15357154  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  15357153 cattatcacataaaggtttcgtcagatcacat 15357122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 17136908 - 17137023
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| ||| |||||||||| ||| ||| ||||||||||||||||||||||||  |  ||||||||||||| ||| |||  |||||||||| |||||     
T  17136908 caatattgaacaagacaaggatgacacggtctatgccttgtgtttaatatagacaggagggaaaaagggtaattatacacatgatcattatcacagaaag 17137007  T
Q  117 gttttgttagatcaca 132  Q
    |||| || ||||||||    
T  17137008 gtttcgtcagatcaca 17137023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18520515 - 18520646
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||| |  | |||||| |||| ||| |||  ||    
T  18520515 aaatgtctacgggcccaatattgaactacacaaggatgacacggtctatgccttgtgtttaatatagacatgagggcaaaaggataattatacacatgat 18520614  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18520615 cattatcacagaaaggtttcgtcagatcacat 18520646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 1647188 - 1647057
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  |||| || |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||| ||||| ||| |||  ||    
T  1647188 aaatgtctacgggcccaattttgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagagtaattatacacatgat 1647089  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  1647088 cattatcacagaaaggtttcgtcagatcacat 1647057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15600551 - 15600420
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15600551 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 15600452  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    || ||||| ||||| |||| || |||||||||    
T  15600451 cactatcacagaaaggtttcgtcagatcacat 15600420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15607096 - 15606965
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15607096 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 15606997  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    || ||||| ||||| |||| || |||||||||    
T  15606996 cactatcacagaaaggtttcgtcagatcacat 15606965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 8491035 - 8491153
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||| |||| ||| |||  ||    
T  8491035 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaggataattatacacatgat 8491134  T
Q  102 cattatcaaagaaatgttt 120  Q
    |||||||| ||||| ||||    
T  8491135 cattatcacagaaaggttt 8491153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 54385236 - 54385286
Alignment:
Q  185 gtttaatttggacccactgaaaaattggtccaacttggacccattaactta 235  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  54385236 gtttaatttggacccattgaaaaattgatccaacttggaccaattaactta 54385286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17780785 - 17780654
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| | |  ||    
T  17780785 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacatatgat 17780686  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  17780685 cattatcacataaaggtttcgtcagatcacat 17780654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 18523225 - 18523289
Alignment:
Q  27 aactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaat 91  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||| |  | |||||||||||    
T  18523225 aactagacaaggatgacacggtctatgccttgtgtttaatatagacatcagggcaaaagggtaat 18523289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 32056566 - 32056503
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaata 67  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||    
T  32056566 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaata 32056503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 18532181 - 18532050
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||| |  | ||||||||||| ||| |||  ||    
T  18532181 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgtttaatatagacatgagggcaaaagggtaattatacacatgat 18532082  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18532081 cattatcacagaaaggtttcgtcagatcacat 18532050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18252570 - 18252701
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18252570 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18252669  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18252670 cattatcacagaaaggtttcgtcagatcacat 18252701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 27310229 - 27310137
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatca 109  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||||||||||    
T  27310229 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatca 27310137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 16358702 - 16358595
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||| || |  | ||||||||||| ||| |||  ||    
T  16358702 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagagatgagggcaaaagggtaattatacacatgat 16358603  T
Q  102 cattatca 109  Q
    ||||||||    
T  16358602 cattatca 16358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27131077 - 27130946
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||| |||||||| ||||||||||| |  | ||||||||||| ||| |||  |     
T  27131077 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgtcttgtgttcaatatagacatgagggcaaaagggtaattatacacatgaa 27130978  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    ||||||||  |||| ||||||| | |||||||    
T  27130977 cattatcacggaaaggttttgtcatatcacat 27130946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 23507440 - 23507546
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcata--aacaat 101  Q
    ||||||||| |||  |||||||||||||||| ||| | ||| |||  |||||||||||| ||||||||||  || ||||||||||||| |||  || |||    
T  23507440 aaatgtctaagggaccaatattaaactagaccagggtgacacggt--atgccttgtgttcaatatagacacgaaggaaaaagggtaattatacgaaaaat 23507537  T
Q  102 cattatcaa 110  Q
    |||||||||    
T  23507538 cattatcaa 23507546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3855571 - 3855520
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatag 70  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||    
T  3855571 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatag 3855520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 1988 - 1857
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  1988 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 1889  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  1888 cattatcacagaaaggtttcgtcagatcacat 1857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10879 - 10748
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10879 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 10780  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10779 cattatcacagaaaggtttcgtcagatcacat 10748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 230058 - 229927
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||||||| |||| |||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  230058 aaatgtctacgggcccaatattgaactagacaaggatgacatggtttatgtcttgtgttcaatatagacataagggcaaaagggtaattatacacatgat 229959  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | |||||||| || |||||||||    
T  229958 cattatcacataaatgtttcgtcagatcacat 229927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15152983 - 15153114
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15152983 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 15153082  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  15153083 cattatcacagaaaggtttcgtcagatcacat 15153114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29328324 - 29328455
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  29328324 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 29328423  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  29328424 cattatcacagaaaggtttcgtcagatcacat 29328455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 11535729 - 11535598
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||||| || ||||||||||| |  | ||||||||||| ||| |||  ||    
T  11535729 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtattcaatatagacatgagggcaaaagggtaattatacacatgat 11535630  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  11535629 cattatcacagaaaggtttcgtcagatcacat 11535598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 11542647 - 11542516
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||| ||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||| |||| ||| |||  ||    
T  11542647 aaatgtctacgggcccaatattgaacttgacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaggataattatacacatgat 11542548  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  11542547 cattatcacagaaaggtttcgtcagatcacat 11542516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 12751366 - 12751497
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||| |||| ||| |||  ||    
T  12751366 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaggataattatacacatgat 12751465  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
     ||||||| ||||| |||| || |||||||||    
T  12751466 tattatcatagaaaggtttcgtcagatcacat 12751497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18561538 - 18561669
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| | |  |     
T  18561538 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacataagggcaaaagggtaattatacatatgaa 18561637  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18561638 cattatcacagaaaagtttcgtcagatcacat 18561669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 12739076 - 12739201
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||   |  ||||||||||||| ||| |||  ||    
T  12739076 aaatgtctacgggaccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagac--gagggaaaaagggtaattatacacatgat 12739173  T
Q  102 cattatcaaagaaatgttttgttagatc 129  Q
    |||||||| ||||| |||| || |||||    
T  12739174 cattatcacagaaaggtttcgtcagatc 12739201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 11652263 - 11652394
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaac--aat 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| | || ||||||||||| ||| ||  |||    
T  11652263 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagagcaaaagggtaattatacacataat 11652362  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||| | ||||| |||| || |||||||||    
T  11652363 cattattacagaaaggtttcgtcagatcacat 11652394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17691107 - 17690976
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  17691107 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 17691008  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  17691007 cattatcacagaaaggtttcgtcagatcacat 17690976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27380919 - 27380788
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  27380919 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 27380820  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  27380819 cattatcacagaaaggtttcgtcagatcacat 27380788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27471302 - 27471171
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  27471302 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 27471203  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  27471202 cattatcacagaaaggtttcgtcagatcacat 27471171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29309430 - 29309561
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  29309430 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 29309529  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  29309530 cattatcacagaaaggtttcgtcagatcacat 29309561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29316389 - 29316520
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  29316389 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 29316488  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  29316489 cattatcacagaaaggtttcgtcagatcacat 29316520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17684136 - 17684005
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcat--aaacaat 101  Q
    |||||||||||||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||  |||  |     
T  17684136 aaatgtctatgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacataagggcaaaagggtaattatacaaatgaa 17684037  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  17684036 cattatcacagaaaagtttcgtcagatcacat 17684005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 27297169 - 27297300
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  27297169 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 27297268  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  27297269 cattatcacagaaaggtttcgtcagatcacat 27297300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 16559139 - 16559008
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||| |||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  16559139 aaatgtctacgggcccaatattgaactaaacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 16559040  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| |||||  ||| || |||||||||    
T  16559039 cattatcacagaaagatttcgtcagatcacat 16559008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 25536843 - 25536788
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacat 74  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  25536843 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacat 25536788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 8858707 - 8858838
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  8858707 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 8858806  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  8858807 cattatcacagaaaggtttcgtcagatcacat 8858838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18262752 - 18262883
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18262752 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18262851  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18262852 cattatcacagaaaggtttcgtcagatcacat 18262883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 55613223 - 55613354
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  55613223 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 55613322  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  55613323 cattatcacagaaaggtttcgtcagatcacat 55613354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 18269613 - 18269742
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18269613 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18269712  T
Q  102 cattatcaaagaaatgttttgttagatcac 131  Q
    |||||||| ||||| |||| || |||||||    
T  18269713 cattatcacagaaaggtttcgtcagatcac 18269742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 26971003 - 26971136
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  26971003 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 26971102  T
Q  102 cattatcaaagaaatgttttgttagatcacataa 135  Q
    |||||||| ||||| |||| || |||||||||||    
T  26971103 cattatcacagaaaggtttcgtcagatcacataa 26971136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 5707860 - 5707972
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  5707860 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 5707959  T
Q  102 cattatcaaagaa 114  Q
    |||||||||||||    
T  5707960 cattatcaaagaa 5707972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 5714488 - 5714600
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  5714488 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 5714587  T
Q  102 cattatcaaagaa 114  Q
    |||||||||||||    
T  5714588 cattatcaaagaa 5714600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 19926412 - 19926296
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  19926412 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatcacagaaag 19926313  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  19926312 gtttcgtcagatcacat 19926296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 869137 - 869264
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||| ||||| ||| |||  ||    
T  869137 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagagtaattatacacatgat 869236  T
Q  102 cattatcaaagaaatgttttgttagatc 129  Q
    |||||||| ||||| |||| ||||||||    
T  869237 cattatcacagaaaggtttcgttagatc 869264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10621000 - 10620869
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10621000 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 10620901  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10620900 cattatcacagaaaggtttcgtcagatcacat 10620869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10628079 - 10627948
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10628079 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 10627980  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10627979 cattatcacagaaaggtttcgtcagatcacat 10627948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 26964180 - 26964311
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  26964180 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 26964279  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  26964280 cattatcacagaaaggtttcgtcagatcacat 26964311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 28392801 - 28392670
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  28392801 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 28392702  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| ||||  | |||||||||    
T  28392701 cattatcacagaaaggtttcatcagatcacat 28392670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 8845758 - 8845874
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  8845758 caatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatatacatgatcattatcacagaaag 8845857  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  8845858 gtttcgtcagatcacat 8845874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 4426282 - 4426151
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    |||||||||||||  ||||||| |||||||||||||| |||   | ||||||||||||| | ||||||||| |  ||||||||||||| ||| |||  ||    
T  4426282 aaatgtctatgggcccaatattgaactagacaaggatgacacaatatatgccttgtgttcagtatagacatgagggaaaaagggtaattatacacatgat 4426183  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
     ||||||| ||||| |||| || |||||||||    
T  4426182 tattatcacagaaaggtttcgtcagatcacat 4426151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 10689821 - 10689886
Alignment:
Q  6 atgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatataga 71  Q
    ||||||||| |  ||||||| |||||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  10689821 atgtctatgagcccaatattgaactagacaaggatgacacggtctatgcattgtgttcaatataga 10689886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 10903461 - 10903526
Alignment:
Q  6 atgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatataga 71  Q
    ||||||||| |  ||||||| |||||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  10903461 atgtctatgagcccaatattgaactagacaaggatgacacggtctatgcattgtgttcaatataga 10903526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 21329915 - 21329784
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  21329915 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 21329816  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  21329815 cattatcacagaaaggtttcgtcagatcacat 21329784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 18797046 - 18797133
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaat 91  Q
    ||||||||| |||  ||||||| |||||||||||||| ||||||| |||||||||| || ||||||||||| |  |||||||||||||    
T  18797046 aaatgtctacgggcccaatattgaactagacaaggatgacatggtttatgccttgtattcaatatagacatgagggaaaaagggtaat 18797133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 22791510 - 22791394
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||||||||||  ||||     
T  22791510 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatcactgaaag 22791411  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  22791410 gtttcgtcagatcacat 22791394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 25657 - 25526
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcat--aaacaat 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| |  | ||||||||||| ||  | | |||    
T  25657 aaatgtctacgggcccaatattgaactagacaaggatgacatggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacatataat 25558  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  25557 cattatcacataaaggtttcgtcagatcacat 25526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 19714165 - 19714034
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||| |  | ||||||||||| ||| |||  ||    
T  19714165 aaatgtctacgggcccaatattgaactatacaaggatgacacggtctatgccttgtgtttaatatagacatgagggcaaaagggtaattatacacatgat 19714066  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  19714065 cattatcacataaaggtttcgtcagatcacat 19714034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 24701889 - 24701758
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||  || ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  24701889 aaatgtctacgggcccaatattgaactagacaaggatggcacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 24701790  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  24701789 cattatcacagaaaggtttcgtcagatcacat 24701758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 24695125 - 24694994
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||   | ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  24695125 aaatgtctacgggcccaatattgaactagacaaggatggaacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 24695026  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  24695025 cattatcacagaaaggtttcgtcagatcacat 24694994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 19706886 - 19706755
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||  ||| ||| |||| |||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  19706886 aaatgtctacgggcccaatattgaactagacaaggacgacacggtctatggcttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 19706787  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| ||||  | |||||||||    
T  19706786 cattatcacagaaaggtttcatcagatcacat 19706755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 7662 - 7778
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||| ||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  7662 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatataggcatgagggcaaaagggtaattatacacatgatcattatcacagaaag 7761  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  7762 gtttcgtcagatcacat 7778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 18827 - 18940
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||| |||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18827 aaatgtctacgggcccaatattgaacgagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18926  T
Q  102 cattatcaaagaaa 115  Q
    |||||||| |||||    
T  18927 cattatcacagaaa 18940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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