View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_63 (Length: 254)
Name: NF4908_low_63
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 1106735 - 1106630
Alignment:
| Q |
17 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttatctataatcacaatgcaacatggttaatgaattgcagcaaaac |
116 |
Q |
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| T |
1106735 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttatctataatcacaatgcaacatggttaatgaattgcagcaaaac |
1106636 |
T |
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| Q |
117 |
aacata |
122 |
Q |
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|||||| |
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| T |
1106635 |
aacata |
1106630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 1106632 - 1106551
Alignment:
| Q |
155 |
atattttaattcttttccacaattctacggatcaatatccggataggtaagtcatagtgtgttgtgtcgcccatggtcatgg |
236 |
Q |
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| T |
1106632 |
atattttaattcttttccacaattctacggatcaatatccggataggtaagtcatagtgtgttatgtcgcccatggtcatgg |
1106551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 3735856 - 3735768
Alignment:
| Q |
66 |
actcgttatctataatcacaatgcaacatggttaatgaattgcagcaaaacaacataaatctaagcatatcaatagctggatttataaaa |
155 |
Q |
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| T |
3735856 |
actcgttatcaataatcacaatgcaacatggctaatgaattctag-gaaacaacatgaacctaagcatatcagtagctcaatttataaaa |
3735768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 22981792 - 22981849
Alignment:
| Q |
17 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttat |
74 |
Q |
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| T |
22981792 |
cacagagtagggattctgaagaaaaccaaccaaattcacgtgtaaataaactcgttat |
22981849 |
T |
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