View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_low_66 (Length: 251)

Name: NF4908_low_66
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_low_66
NF4908_low_66
[»] chr5 (4 HSPs)
chr5 (1-246)||(225527-225769)
chr5 (122-224)||(39576553-39576655)
chr5 (122-221)||(4146708-4146807)
chr5 (165-213)||(3561341-3561389)
[»] chr8 (5 HSPs)
chr8 (117-216)||(9903119-9903218)
chr8 (117-224)||(9860823-9860930)
chr8 (117-212)||(27361197-27361292)
chr8 (117-213)||(9842193-9842289)
chr8 (117-213)||(9847223-9847319)
[»] chr1 (2 HSPs)
chr1 (123-206)||(46671869-46671951)
chr1 (165-213)||(5054052-5054100)
[»] chr6 (1 HSPs)
chr6 (117-206)||(112390-112479)
[»] scaffold0658 (1 HSPs)
scaffold0658 (117-212)||(2605-2700)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 225769 - 225527
Alignment:
Q  1 cactatcacaaaataaatatccaagtaccattatccataatttagtttttactcaatcttacatatgaccatttcctttatttttaaacaaatgattgtt 100  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225769 cactatcacaaaataaatatccaagtac---tatccataatttagtttttactcaatcttacatatgaccatttcctttatttttaaacaaatgattgtt 225673  T
Q  101 cctgtccttcttaataaaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  225672 cctgtccttcttaataaaactagactgttggtgtgaagccatacttcaatatcacccacaacagtgccctcaatctttgtcagttgtctagtcttgacat 225573  T
Q  201 tgtaactaaaatgcatggttttcttgccttcgtaattcttctctct 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  225572 tgtaactaaaatgcatggttttcttgccttcgtaattcttctctct 225527  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 39576655 - 39576553
Alignment:
Q  122 agactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatgcatggttt 221  Q
    |||||||| ||||||||||||||||||| ||| |||    || |||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||    
T  39576655 agactgttagtgtgaagccatacttcaaaatcacccgaggcaatgccctcaatctttgtcaattgtttggtcttgacattgtaactaaaatgtatgtttt 39576556  T
Q  222 tct 224  Q
    |||    
T  39576555 tct 39576553  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 4146807 - 4146708
Alignment:
Q  122 agactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatgcatggttt 221  Q
    |||||||| |||||||||||||| | |||||| ||||||||| ||   ||||||||||| ||| ||||  ||||||||||||||||||||||||||||||    
T  4146807 agactgttagtgtgaagccataccttaatatcacccacaacaatgttgtcaatctttgttagtcgtttgatcttgacattgtaactaaaatgcatggttt 4146708  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 3561341 - 3561389
Alignment:
Q  165 tgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatg 213  Q
    ||||||| |||||||||| | || |||||||||||||||||| ||||||    
T  3561341 tgccctctatctttgtcaatcgtctagtcttgacattgtaaccaaaatg 3561389  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 9903218 - 9903119
Alignment:
Q  117 aaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatgcat 216  Q
    ||||||||||||| ||||||| |||||||| || ||| |||||  || || ||||||||||| ||| |||||| ||||| |||||||||| |||||||||    
T  9903218 aaactagactgttagtgtgaaaccatactttaaaatctcccacgtcaatgtcctcaatctttatcaattgtttggtcttcacattgtaacaaaaatgcat 9903119  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 9860930 - 9860823
Alignment:
Q  117 aaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatgcat 216  Q
    |||||| ||||||  |||||  |||||| |||| ||| |||||| || ||||||| ||| |||||| |||| |||| ||||||||||||| |||||| ||    
T  9860930 aaactaaactgttaatgtgagaccatacctcaaaatcacccacatcaatgccctcgatcattgtcaattgtctagttttgacattgtaaccaaaatgaat 9860831  T
Q  217 ggttttct 224  Q
    | ||||||    
T  9860830 gtttttct 9860823  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 27361292 - 27361197
Alignment:
Q  117 aaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaat 212  Q
    |||||||| ||||||| ||||||||||| |||  ||  |||||  || |||| ||||| |||||||||| | |||||||||||||||||| |||||    
T  27361292 aaactagagtgttggtatgaagccatacatcataattacccactgcaatgccatcaatttttgtcagttctctagtcttgacattgtaacaaaaat 27361197  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 9842289 - 9842193
Alignment:
Q  117 aaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatg 213  Q
    ||||||||||||| |||||||| ||||||||||  | ||| ||  || || ||||||||||||||| |||  | ||||| |||||||||| ||||||    
T  9842289 aaactagactgttagtgtgaagacatacttcaaagttgccaacgtcaatgtcctcaatctttgtcaattgcctggtcttcacattgtaaccaaaatg 9842193  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 9847319 - 9847223
Alignment:
Q  117 aaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatg 213  Q
    |||||||| |||| ||||||||||||||||||||||  ||| || |  || ||| |||||| |||| |||  | ||||| |||||||||| ||||||    
T  9847319 aaactagattgttagtgtgaagccatacttcaatatttccctcatcgatgtccttaatcttagtcaattgcctggtcttcacattgtaaccaaaatg 9847223  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 46671869 - 46671951
Alignment:
Q  123 gactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaac 206  Q
    ||||||| |||||||||||||| | || |||||||||| || |||||| |||| ||||||||||| | ||||||||||||||||    
T  46671869 gactgttagtgtgaagccataccttaa-atcgcccacatcaatgcccttaatcattgtcagttgtctggtcttgacattgtaac 46671951  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 5054052 - 5054100
Alignment:
Q  165 tgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaatg 213  Q
    ||||||| ||||||||||  ||||| |||||||||||||||| ||||||    
T  5054052 tgccctcgatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 5054100  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 112390 - 112479
Alignment:
Q  117 aaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaac 206  Q
    |||||||| | || || ||||||||| |||||| || |||||| | | || | |||||||||||||||||| ||||||||||||||||||    
T  112390 aaactagagtatttgtatgaagccatgcttcaaaatggcccactataatgtcatcaatctttgtcagttgtctagtcttgacattgtaac 112479  T

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Target: scaffold0658 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 2605 - 2700
Alignment:
Q  117 aaactagactgttggtgtgaagccatacttcaatatcgcccacaacagtgccctcaatctttgtcagttgtttagtcttgacattgtaactaaaat 212  Q
    |||||||| ||||||| ||||||||||| |||  ||  |||||  || |||| ||||| |||||||||| | |||||||||||||||||| |||||    
T  2605 aaactagagtgttggtatgaagccatacatcataattacccactgcaatgccatcaatttttgtcagttctctagtcttgacattgtaacaaaaat 2700  T

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