View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_71 (Length: 242)
Name: NF4908_low_71
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_71 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 14767519 - 14767295
Alignment:
| Q |
18 |
aattcgcgctcttctcccgcctcaccaacaaaaacaatccaatttcgaaatcctcactgcatgcctttggcgttgtcggacaatcgcgttacaaccagac |
117 |
Q |
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| T |
14767519 |
aattcgcgctcttctcccgcctcaccaacaaaaacaatccaattttgaaatcctcactgcatgcctttggcgttgtcgtacaatcgcgttacaaccagac |
14767420 |
T |
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| Q |
118 |
accgatgaagaagttcgcataatctgcattgtcaatgctcgtggcaagtttaatccaccgttaccaaacggttactacggtaatgcttttgcatttcctg |
217 |
Q |
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| T |
14767419 |
actgacgaagaagttcgcataatctgcattgtcaatgctcgtggcaagtttaatccaccgttgccaaacggttactacggtaatgcttttgcatttcctg |
14767320 |
T |
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| Q |
218 |
tcgcggttacaaccgccgggaaact |
242 |
Q |
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| T |
14767319 |
tcgcggttacaaccgcggggaaact |
14767295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 14873601 - 14873394
Alignment:
| Q |
17 |
caattcgcgctcttctcccgcctcaccaacaaaaacaatccaatttcgaaatcctcactgcatgcctttggcgttgtcggacaatcgcgttacaaccaga |
116 |
Q |
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| T |
14873601 |
caatacgcgctcttcttccacctcaccaacaagaacactctaattttgaaatcctcactgcattcctttggcgttgtcgtacaattgcgttacaaccaga |
14873502 |
T |
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| Q |
117 |
caccgatgaagaagttcgcataatctgcattgtcaatgctcgtggcaagt---ttaatccaccgttaccaaacggttactacggtaatgcttttgcattt |
213 |
Q |
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| T |
14873501 |
catcaacggagaagttcacata---------gtcaacacgcatggcaagtttattaacccacccttaccaaacggtaactacggtaacagttttgcattt |
14873411 |
T |
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| Q |
214 |
cctgtcgcggttacaac |
230 |
Q |
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| T |
14873410 |
cctgctgcggttacaac |
14873394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 84495 - 84374
Alignment:
| Q |
43 |
caacaaaaacaatccaatttcgaaatcctcactgcatgcctttggcgttgtcggacaatcgcgttacaaccagacaccgatgaagaagttcgcataatct |
142 |
Q |
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| T |
84495 |
caacaaaaatactccaattttgaaatcatcacatcatatttttggcgttgtcgtacactagcgttacaactagatactaacgaagaagttcgcataatct |
84396 |
T |
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| Q |
143 |
gcattgtcaatgctcgtggcaa |
164 |
Q |
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| T |
84395 |
gcatcgtcgatgcacgtagcaa |
84374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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