View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_72 (Length: 242)
Name: NF4908_low_72
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 40407649 - 40407451
Alignment:
| Q |
1 |
cataggcatcgtaaacatcatcaaacaagagttaacccttaagcctaaattgtttacttgcaataagggacacattggttttcttggagtttttgaagat |
100 |
Q |
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| T |
40407649 |
cataggcatcgtaaacatcatcgaacaagagttaacccttaagcctaaattgtttacttgcaataagggacacattggttttcttggagttttttaagat |
40407550 |
T |
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| Q |
101 |
ccacttaatggactgtttcttcaatagacattcctccgcatgcaccaattaaacatttaaactcataatcaaattacatgtataatacaccaccttgtc |
199 |
Q |
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| T |
40407549 |
ccacttaatggactgttttttcaatagacattcctccgcatgcaccaattaaacatttaaagtcataatcaaattacatgtataatacactaccttgtc |
40407451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 242
Target Start/End: Complemental strand, 40407438 - 40407409
Alignment:
| Q |
213 |
tgtataatacactatgtgagttcttatttt |
242 |
Q |
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| T |
40407438 |
tgtataatacactatgtgagttcttatttt |
40407409 |
T |
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