View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_75 (Length: 238)
Name: NF4908_low_75
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 4065296 - 4065094
Alignment:
| Q |
19 |
atttacctcacttttgacattcttttgttggtctgcatagggcttcttgcacattgatgaataccctccagatgctaatcaaggacttgatatcccatca |
118 |
Q |
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| T |
4065296 |
atttacctcacttttgacattcttttgttggtctgcatagggcttcttgcacattgatgaataccctccagatgctactcaaggacttgatatcccatca |
4065197 |
T |
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| Q |
119 |
gcaataataagctttcctgacttccatgctggtttgcaattttctgatgactctataaccaagtcgccaatgctgtctaaattccaggttatttgaatct |
218 |
Q |
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| T |
4065196 |
gcaataataagctttcctgacttccatgctggtttgcaattttctgatgactctataaccaagtcgccaatgctgtctaaattccaggttatttgaatct |
4065097 |
T |
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| Q |
219 |
ctg |
221 |
Q |
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||| |
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| T |
4065096 |
ctg |
4065094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 214
Target Start/End: Complemental strand, 4058929 - 4058755
Alignment:
| Q |
42 |
tttgttggtctgca--tagggcttcttgcacattgatgaataccctccagatgctaatcaaggacttgatatcccatcagcaataataagctttcctgac |
139 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||| |||| |||||||||||||||||||||||||||||| |
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| T |
4058929 |
tttgttggtctgcacatagggcttcttgcacattgatgaatatcctccagatgccaaccagggatttgacatcccatcagcaataataagctttcctgac |
4058830 |
T |
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| Q |
140 |
ttccatgctggtttgcaattttctgatgactctataaccaagtcgccaatgctgtctaaattccaggttatttga |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||||||| |||||||||||| |
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| T |
4058829 |
ttccatgctggtttgcaattttctaatgactctataagcaagtcgccaatgttatctaaattacaggttatttga |
4058755 |
T |
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