View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_low_77 (Length: 237)

Name: NF4908_low_77
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_low_77
NF4908_low_77
[»] chr3 (5 HSPs)
chr3 (7-222)||(20386965-20387179)
chr3 (7-222)||(20386197-20386411)
chr3 (7-222)||(20386581-20386795)
chr3 (65-222)||(20387349-20387504)
chr3 (7-57)||(20385985-20386035)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 20387179 - 20386965
Alignment:
Q  7 agcagcacagattagaacataaaattaggaacatcaagacacgagatagcaaggaaacaaaactttgtccaaaggtgtgacatatagtagtcataacctt 106  Q
    |||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  20387179 agcaccacaaattagaacataaaaataggaatatcaagacacgagatagcaaggaaacaaaactttgtc-aaaggtgtgacatatagtagtcataaccct 20387081  T
Q  107 aaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaaatcacagatacaatccagttccgaacaagaaatcaatccgat 206  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20387080 aaattatattcagtaaagcatcataaaagagaaataccctcagagagacccgtttcaaatcacaaatacaatccagttccgaacaagaaatcaatccgat 20386981  T
Q  207 ctaccaacaaactagt 222  Q
    | ||||||||||||||    
T  20386980 caaccaacaaactagt 20386965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 20386411 - 20386197
Alignment:
Q  7 agcagcacagattagaacataaaattaggaacatcaagacacgagatagcaaggaaacaaaactttgtccaaaggtgtgacatatagtagtcataacctt 106  Q
    |||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  20386411 agcaccacaaattagaacataaaaataggaatatcaagacacgagatagcaaggaaacaaaactttgtc-aaaggtgtgacatatagtagtcataaccct 20386313  T
Q  107 aaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaaatcacagatacaatccagttccgaacaagaaatcaatccgat 206  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  20386312 aaattatattctgtaaagcatcataaaagagaaataccctcaaagagacccgtttcaaatcacaaatacaatccagttccgaacaagaaatcaatccggt 20386213  T
Q  207 ctaccaacaaactagt 222  Q
    | ||||||||||||||    
T  20386212 caaccaacaaactagt 20386197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 20386795 - 20386581
Alignment:
Q  7 agcagcacagattagaacataaaattaggaacatcaagacacgagatagcaaggaaacaaaactttgtccaaaggtgtgacatatagtagtcataacctt 106  Q
    |||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |    
T  20386795 agcaccacaaattagaacataaaaataggaatatcaagacacgagatagcaaggaaacaaaactttgtc-aaagttgtgacatatagtagtcataaccct 20386697  T
Q  107 aaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaaatcacagatacaatccagttccgaacaagaaatcaatccgat 206  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |    
T  20386696 aaattatattctgtaaagcatcataaaagagaaataccctcagagagacccatttcaaatcacaaatacaatccagttccgaacaagaaatcaatccggt 20386597  T
Q  207 ctaccaacaaactagt 222  Q
    | ||||||||||||||    
T  20386596 caaccaacaaactagt 20386581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 20387504 - 20387349
Alignment:
Q  65 aaaactttgtccaaaggtgtgacatatagtagtcataaccttaaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaa 164  Q
    |||| ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  20387504 aaaaatttgtccaa-ggtgtgac-tatagtagtcataaccctaaattatattcagtaaagcatcataaaagagaaataccctcagagagacccatttcaa 20387407  T
Q  165 atcacagatacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagt 222  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20387406 atcacatatacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagt 20387349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 20386035 - 20385985
Alignment:
Q  7 agcagcacagattagaacataaaattaggaacatcaagacacgagatagca 57  Q
    |||| |||| |||||||||||||| |||||||||||||||| |||||||||    
T  20386035 agcaccacaaattagaacataaaaataggaacatcaagacatgagatagca 20385985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University