View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_78 (Length: 237)
Name: NF4908_low_78
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21815130 - 21814913
Alignment:
| Q |
1 |
aaaatacgataatcccccatatggttatgcatcaggacaagattgtgatggcacgttgttgacgatcttagcatatccctcgatcgtccagtttcaagaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21815130 |
aaaatacgacaatcccccatatggttatgcatcaggacaagattgtgatggcacgttgttgacgatcttagcatatccctcgatcgtccagtttcaagaa |
21815031 |
T |
|
| Q |
101 |
tatgttatgaatatgacatgaataagataagatactatcatagtattcagattagtggtcttagtttccctgaccgctagctaaggcaagcagaatagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
21815030 |
tatgttatgaatatgacatgaataagataagatactatcatagtattcagattagtggttttagtttccctgacc----gctaaggcaagcagaatagga |
21814935 |
T |
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| Q |
201 |
tagtaagacctgctgatcaggc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21814934 |
tagtaagacctgctgatcaggc |
21814913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16463670 - 16463453
Alignment:
| Q |
1 |
aaaatacgataatcccccatatggttatgcatcaggacaagattgtgatggcacgttgttgacgatcttagcatatccctcgatcgtccagtttcaagaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16463670 |
aaaatacgacaatcccccatatggttatgcatcaggacaagattgtgatggcacgttgttgacgatcttagcatatccctcgatcgtccagtttcaagaa |
16463571 |
T |
|
| Q |
101 |
tatgttatgaatatgacatgaataagataagatactatcatagtattcagattagtggtcttagtttccctgaccgctagctaaggcaagcagaatagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
16463570 |
tatgttatgaatatgacatgaataagataagatactatcatagtattcagattagtggttttagtttccctgacc----gctaaggcaagcagaatagga |
16463475 |
T |
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| Q |
201 |
tagtaagacctgctgatcaggc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
16463474 |
tagtaagacctgctgatcaggc |
16463453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 20189039 - 20189126
Alignment:
| Q |
29 |
gcatcaggacaagattgtgatggcacgttgttgacgatcttagca-tatccctcgatcgtccagtttcaagaatatgttatgaatatg |
115 |
Q |
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|||||| |||||| || ||||||||| ||||||||||||||| | | |||| |||||||||||||||||| ||||||||||||||| |
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| T |
20189039 |
gcatcaagacaagtttatgatggcacactgttgacgatcttagtactttcccctgatcgtccagtttcaagattatgttatgaatatg |
20189126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 22146952 - 22146865
Alignment:
| Q |
29 |
gcatcaggacaagattgtgatggcacgttgttgacgatcttagca-tatccctcgatcgtccagtttcaagaatatgttatgaatatg |
115 |
Q |
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|||||| |||||| || ||||||||| ||||||||||||||| | | |||| |||||||||||||||||| ||||||||||||||| |
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| T |
22146952 |
gcatcaagacaagtttatgatggcacactgttgacgatcttagtactttcccctgatcgtccagtttcaagattatgttatgaatatg |
22146865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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