View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_80 (Length: 232)
Name: NF4908_low_80
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_80 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 42176896 - 42176665
Alignment:
| Q |
1 |
gttgctacaaaaacgtgtgcatatattagtcagcatgacattcactacggagaaaatacggtgagagagacattggatttttcatcatgttgtctaggtg |
100 |
Q |
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| T |
42176896 |
gttgctacaaaaacgtgtgcatatattagtcagcatgacattcactacagagaaaatacggtgagagagacattggatttttcatcatgttgtctaggtg |
42176797 |
T |
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| Q |
101 |
ttggcacaaggtatgaattattgatggaactctcaagaagggagaaagatgcaggaattaaaccagaccctgagattgatgctttcatgaaggccattgc |
200 |
Q |
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| T |
42176796 |
ttggcacaaggtatgaattattgatggaactctcaagaagggagaaagatgcaggaattaaaccagaccctgagattgatgctttcatgaaggccattgc |
42176697 |
T |
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| Q |
201 |
attatcaggccaaaaaaccagttttgtaactg |
232 |
Q |
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| T |
42176696 |
attatcaggccaaaaaaccagttttgtaactg |
42176665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 42157672 - 42157441
Alignment:
| Q |
1 |
gttgctacaaaaacgtgtgcatatattagtcagcatgacattcactacggagaaaatacggtgagagagacattggatttttcatcatgttgtctaggtg |
100 |
Q |
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| T |
42157672 |
gttgctgcaaaaacttgtgcctatattagtcagcatgacattcactacggagaaattacagtgagagagactttagatttttcatcacgttgtctaggcg |
42157573 |
T |
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| Q |
101 |
ttggcacaaggtatgaattattgatggaactctcaagaagggagaaagatgcaggaattaaaccagaccctgagattgatgctttcatgaaggccattgc |
200 |
Q |
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| T |
42157572 |
ttggcagtagatatgaaatgttgacagaactctcaagaagggagagagaagctggaattaaaccagaccctgagattgatgctttcatgaaggctattgc |
42157473 |
T |
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| Q |
201 |
attatcaggccaaaaaaccagttttgtaactg |
232 |
Q |
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| T |
42157472 |
attatcaggccaaaaaaccagttttgtaactg |
42157441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 42145709 - 42145487
Alignment:
| Q |
8 |
caaaaacgtgtgcatatattagtcagcatgacattcactacggagaaaatacggtgagagagacattggatttttcatcatgttgtctaggtgttggcac |
107 |
Q |
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| T |
42145709 |
caaaaacttgtgcctatattagtcagcatgacatccactatggagaaatgacagtgagagagactttagatttttcatcacgttgtctaggtgttggcag |
42145610 |
T |
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| Q |
108 |
aaggtatgaattattgatggaactctcaagaagggagaaagatgcaggaattaaaccagaccctgagattgatgctttcatgaaggccattgcattatca |
207 |
Q |
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| T |
42145609 |
taggtatgaaatgttgaaagaactctcaaaaagagagagagaagctggaattaaaccagaccctgagattgatgctttcatgaaggctgttgtattatca |
42145510 |
T |
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| Q |
208 |
ggccaaaaaaccagttttgtaac |
230 |
Q |
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| T |
42145509 |
ggccaaaagagcagttttgtaac |
42145487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 42136413 - 42136220
Alignment:
| Q |
1 |
gttgctacaaaaacgtgtgcatatattagtcagcatgacattcactacggagaaaatacggtgagagagacattggatttttcatcatgttgtctaggtg |
100 |
Q |
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||||||| || ||| ||||| |||||| || | |||||| |||| || ||||||| |||||||||||| |||| ||||||||| | | ||| |||| | |
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| T |
42136413 |
gttgctagaagaacatgtgcctatattggtgaacatgaccttcattatggagaaatgacggtgagagagtcattagatttttcaggacgctgtttaggcg |
42136314 |
T |
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| Q |
101 |
ttggcacaaggtatgaattattgatggaactctcaagaagggagaaagatgcaggaattaaaccagaccctgagattgatgctttcatgaaggc |
194 |
Q |
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| T |
42136313 |
ttggaacaaggtatgaaatgttggaggaacttttaagaagggagaaaggagcgggaattaagccagaccctcagattgatgcattcatgaaggc |
42136220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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