View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_87 (Length: 218)
Name: NF4908_low_87
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 36086066 - 36086268
Alignment:
| Q |
1 |
cagaatgttccttagaagtaagaagaatctaaacatcgccaggagcagcatctccagctaccttagtcttcaaattttcctaaactttcttccatagcga |
100 |
Q |
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| T |
36086066 |
cagaatgttccttagaagtaagaagaatctaaacatcgccaggagcagcatctccagctaccttagtcttcaaattttcctaaactttcttccatagcga |
36086165 |
T |
|
| Q |
101 |
cttgagattggctgaagcaactttctcttcttcgagaggtttgaaagcatccacgagtataaccaagtgttgtgctcagatccataccttccttctttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36086166 |
cttgagattggctgaagcaactttctcttcttcgagaggtttgaaagcatccacgagtataaccaagtgttgtgctcagatccataccttccttctttta |
36086265 |
T |
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| Q |
201 |
tct |
203 |
Q |
| |
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||| |
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|
| T |
36086266 |
tct |
36086268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 48393038 - 48392994
Alignment:
| Q |
9 |
tccttagaagtaagaagaatctaaacatcgccaggagcagcatct |
53 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
48393038 |
tccttagaagtaagaagaatctgaacatcaccaggagcagcatct |
48392994 |
T |
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