View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4909-Insertion-1 (Length: 910)

Name: NF4909-Insertion-1
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4909-Insertion-1
NF4909-Insertion-1
[»] chr6 (4 HSPs)
chr6 (8-891)||(17432940-17433823)
chr6 (238-771)||(17454154-17454672)
chr6 (8-91)||(17454840-17454923)
chr6 (827-895)||(17453866-17453933)
[»] chr4 (10 HSPs)
chr4 (234-447)||(38242881-38243094)
chr4 (240-442)||(38226372-38226574)
chr4 (240-434)||(38237919-38238113)
chr4 (242-449)||(38213986-38214192)
chr4 (246-445)||(38253236-38253435)
chr4 (254-451)||(38220022-38220219)
chr4 (246-363)||(38248165-38248281)
chr4 (130-223)||(12678957-12679050)
chr4 (175-214)||(37306525-37306564)
chr4 (131-209)||(44832491-44832569)
[»] chr5 (5 HSPs)
chr5 (132-227)||(40699487-40699582)
chr5 (149-227)||(18237144-18237222)
chr5 (130-182)||(26072158-26072210)
chr5 (149-204)||(17190640-17190695)
chr5 (161-227)||(1248988-1249054)
[»] chr8 (2 HSPs)
chr8 (130-202)||(12519969-12520043)
chr8 (130-227)||(33440512-33440609)
[»] chr2 (3 HSPs)
chr2 (321-432)||(11473504-11473615)
chr2 (319-432)||(11485773-11485886)
chr2 (149-208)||(9132268-9132327)
[»] chr3 (2 HSPs)
chr3 (149-227)||(38602903-38602981)
chr3 (135-204)||(54140814-54140883)
[»] chr1 (1 HSPs)
chr1 (130-188)||(44477880-44477938)
[»] chr7 (2 HSPs)
chr7 (130-196)||(22786192-22786258)
chr7 (130-208)||(29310449-29310527)


Alignment Details
Target: chr6 (Bit Score: 736; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 8 - 891
Target Start/End: Complemental strand, 17433823 - 17432940
Alignment:
Q  8 cattgatatgttgattgggtgaacatatagtctctatactacaaggaatcaacatttataatttgtttcaatctcactttcacaaacataacactagttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17433823 cattgatatgttgattgggtgaacatatagtctctatactacaaggaatcaacatttataatttgtttcaatctcactttcaaaaacataacactagttc 17433724  T
Q  108 atttctttgtcacactctcttaacactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433723 atttctttgtcacactctcttaacactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaag 17433624  T
Q  208 aaagtgttcctaacatttctttcgtagggtattatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccat 307  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433623 aaagcgttcctaacatttctttcgttgggtattatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccat 17433524  T
Q  308 gaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433523 gaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaa 17433424  T
Q  408 ctggatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacttggattagatatcannnnnnnattg 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       ||||    
T  17433423 ctggatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacctggattagatatcatttttttattg 17433324  T
Q  508 gcacaactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctc--gagtgagagttttaccaatcattatggttctacccgac 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  17433323 gcacaactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctcttgagtgagagttttaccaatcattatggttctacccgac 17433224  T
Q  606 acaagatattagtttctatagttgtatacagagtatataccttgttcccaccaaaataatgattttgtgctagggttcaaacatgggaaactaacacaat 705  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17433223 acaagatattagtttctatagttgtacgcagagtatataccttgttcccaccaaaataatgattttgtgctagggttcaaacat-ggaaactaacacaat 17433125  T
Q  706 cattattagcatttgttttataggaaaaatgattatggctcctaaaaggacctctagatttatacc-nnnnnnnnccccttagtgtttgcttgtgatggt 804  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||    
T  17433124 cattattagcatttg-tttata-gaaaaatgattatggctcctaaaaggacctctagatttataccttttttttttaccttagtgtttgcttgtgatggt 17433027  T
Q  805 tttcaactgagggtaataaatg-tttaattaacaagaaaatggtatgatttattttcaactgagtactatcaatggtttcctataatt 891  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  17433026 tttcaattgagggtaagaaatgttttaattaacaagaaaatggtatgatttattttcaactgagtactatcaat-gtttcttataatt 17432940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 238 - 771
Target Start/End: Complemental strand, 17454672 - 17454154
Alignment:
Q  238 attatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaag 337  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  17454672 attatagtgagcaacatgaatttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatgaggagggaaatggttgtgttcatgtgaag 17454573  T
Q  338 aggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggtaattt 437  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||  |||||||||| |||| |||||||||||||    
T  17454572 aggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatcaacattcagggggagttggatcaactttatatggacaggtaattt 17454473  T
Q  438 gcaatagttacatatagtataaattaaaaatcattcttaaatacttggattagatatcannnnnnnattggcacaactttattaaaaagtaagtatgaaa 537  Q
    ||||||||||||||||||||||||| | |||||||||||||         || ||||||       | | |||| ||||||||||||| ||| |||| ||    
T  17454472 gcaatagttacatatagtataaatt-acaatcattcttaaa---------taaatatca-ttttttagtcgcacgactttattaaaaaataattatggaa 17454384  T
Q  538 gggtctaatcaatcatgattttgcgctctc--gagtgagagttttaccaatcattatggttctacccgacacaagatattagtttctatagttgtataca 635  Q
    | ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||| | | |    
T  17454383 gcgtctaatcaatcatgattttgcgctctcttgagtgagagttttaccaatcattatggttctatccgactcaaaacattagtttctacagttgcacaaa 17454284  T
Q  636 gagtatataccttgttcccaccaaaataatgattttgtgctagggttcaaacatgggaaactaacacaatcattattagcatttgttttataggaaaaat 735  Q
    ||| ||| ||    || ||| ||||||||||||||| ||  || ||| |||| |  |||||||||||||||| |||||||||||| || |||  || |||    
T  17454283 gaggatacac--aatttccaacaaaataatgattttatgacagagtttaaacct-agaaactaacacaatca-tattagcatttg-ttcata-aaagaat 17454190  T
Q  736 gattatggctcctaaaaggacctctagatttatacc 771  Q
    |||| |||| |||||||||| ||| |||||||||||    
T  17454189 gattttggcccctaaaaggatctcgagatttatacc 17454154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 17454923 - 17454840
Alignment:
Q  8 cattgatatgttgattgggtgaacatatagtctctatactacaaggaatcaacatttataatttgtttcaatctcactttcaca 91  Q
    |||||||||||||||||||||||| || |||||||| |||||||| | |||| ||||||||||| |||||||||||||||||||    
T  17454923 cattgatatgttgattgggtgaacgtaaagtctctagactacaagtagtcaatatttataatttatttcaatctcactttcaca 17454840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 827 - 895
Target Start/End: Complemental strand, 17453933 - 17453866
Alignment:
Q  827 tttaattaacaagaaaatggtatgatttattttcaactgagtactatcaatggtttcctataattataa 895  Q
    |||||||||| | |||||||| ||||||||| ||||||||||| ||||||| ||||| |||||||||||    
T  17453933 tttaattaacgaaaaaatggtgtgatttattgtcaactgagtaatatcaat-gtttcttataattataa 17453866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 8e-79; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 234 - 447
Target Start/End: Complemental strand, 38243094 - 38242881
Alignment:
Q  234 gggtattatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgt 333  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |||||||||||    
T  38243094 gggtatcatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatagggaggaaaatgggtgtgttcatgt 38242995  T
Q  334 gaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggta 433  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||| || ||||| |||||||||    
T  38242994 gaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatcagcattcaggtggaattggatccaccctatatggacaggta 38242895  T
Q  434 atttgcaatagtta 447  Q
    |||| |||||||||    
T  38242894 atttccaatagtta 38242881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 240 - 442
Target Start/End: Complemental strand, 38226574 - 38226372
Alignment:
Q  240 tatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagag 339  Q
    ||||||||||||| || |||| ||||||||||| |||||||||||||||||||||| ||| ||||||| | ||   ||||||||||||| ||||||||||    
T  38226574 tatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagag 38226475  T
Q  340 gacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggtaatttgc 439  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |    
T  38226474 gacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaactctatacgggcaggtaatttac 38226375  T
Q  440 aat 442  Q
    |||    
T  38226374 aat 38226372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 240 - 434
Target Start/End: Complemental strand, 38238113 - 38237919
Alignment:
Q  240 tatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagag 339  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||   |||||||||||||||||    
T  38238113 tatagtgagcaacatggttttctttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaattcctgtgttcatgtgaagag 38238014  T
Q  340 gacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggtaa 434  Q
    ||||||||||||| | ||||||||||| ||| ||||||||| || |||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  38238013 gacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggtaa 38237919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 242 - 449
Target Start/End: Complemental strand, 38214192 - 38213986
Alignment:
Q  242 tagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagagga 341  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||||||||| | || ||| ||| |   |  |||||||||||||||||||| |||||    
T  38214192 tagtgagcaacatggattt-tttgtttcaggttgagtatcaagttgaatcttgtaccacagatcataatttgagaaatggttgtgttcatgtgatgagga 38214094  T
Q  342 caagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggtaatttgcaa 441  Q
    ||||||||||||||||||||||||| |||||  ||||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||    
T  38214093 caagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatcaactctatatggacaggtaatttgcaa 38213994  T
Q  442 tagttaca 449  Q
    || |||||    
T  38213993 tacttaca 38213986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 246 - 445
Target Start/End: Complemental strand, 38253435 - 38253236
Alignment:
Q  246 gagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaag 345  Q
    ||||||| | |||||||||||||||| |||||||| ||||| |||||||||||| ||| ||  |||||| |||||| ||||||||||| || ||||||||    
T  38253435 gagcaacatagatttctttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaag 38253336  T
Q  346 tctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggtaatttgcaatagt 445  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||  |||||||||||||||||||||    
T  38253335 tctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatcaaccctatttggacaggtaatttgcaatagt 38253236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 254 - 451
Target Start/End: Complemental strand, 38220219 - 38220022
Alignment:
Q  254 tggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccac 353  Q
    |||||||||||||||||| ||||||||||||||||||| |||| || | ||||| |||| | |||||||||||||||||||||||||| ||||||||||     
T  38220219 tggatttctttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccat 38220120  T
Q  354 tacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctatacggacaggtaatttgcaatagttacata 451  Q
    | ||||||||||| ||||||||||||| |||||| ||||||||||| |||||||  ||||| || ||||| ||||||||||||| |||||||||||||    
T  38220119 ttcaaactggtggttatgtgatctatggtgttgcacatcaacattcgggtggaatcggatccaccctatatggacaggtaatttccaatagttacata 38220022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 246 - 363
Target Start/End: Complemental strand, 38248281 - 38248165
Alignment:
Q  246 gagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaag 345  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||| ||  |||||| |||||| |||||||||||||| ||||||||    
T  38248281 gagcaacgtagatttctttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaag 38248183  T
Q  346 tctcccactacaaactgg 363  Q
    ||||||||||||| ||||    
T  38248182 tctcccactacaatctgg 38248165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 12678957 - 12679050
Alignment:
Q  130 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacat 223  Q
    ||||||| |||||| || ||| ||||| |||||||||||| ||   ||||| ||||||  | ||||| ||||||||||||||||||||||||||    
T  12678957 acactttagaaatggatctcatataaagtggtgagactcatatgagtttcatctaatataagagtgaatgttagaaagaaagtgttcctaacat 12679050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 37306525 - 37306564
Alignment:
Q  175 atttcacctaataagaaagtgattgttagaaagaaagtgt 214  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  37306525 atttcacccaataagaaagtgagtgttagaaagaaagtgt 37306564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 44832569 - 44832491
Alignment:
Q  131 cactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaa 209  Q
    ||||||||||||| | | |||||||||||||| |||  ||||  |||||||| ||||| ||||||| || |||||||||    
T  44832569 cactttggaaatggaatccacataaaatggtgggacatacattaatttcacccaataaaaaagtgagtgatagaaagaa 44832491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 40699582 - 40699487
Alignment:
Q  132 actttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 227  Q
    |||||||||||| ||  || ||||| | ||||||| ||||| | ||||||| ||||||||||||| ||||||||||| |||||||||| |||||||    
T  40699582 actttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaataagaaagtgagtgttagaaagagagtgttcctagcatttct 40699487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 18237222 - 18237144
Alignment:
Q  149 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 227  Q
    |||||||| ||||||||| |||||  |||||||| || | ||| |||| ||||||||||| ||||||| ||||||||||    
T  18237222 cacataaagtggtgagacccacatgaatttcacccaagaggaaggtgagtgttagaaagagagtgttcataacatttct 18237144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 26072210 - 26072158
Alignment:
Q  130 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacc 182  Q
    |||||||||||||||||| |||||||| |||||||||  |||| |||||||||    
T  26072210 acactttggaaatgaattccacataaagtggtgagacatacattgatttcacc 26072158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 17190695 - 17190640
Alignment:
Q  149 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttaga 204  Q
    |||||||| ||||||||| ||||||  |||||||||||| |||||||| |||||||    
T  17190695 cacataaagtggtgagacccacataagtttcacctaataggaaagtgagtgttaga 17190640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 1249054 - 1248988
Alignment:
Q  161 tgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 227  Q
    |||||||||||| ||||||| | ||||| | ||||| ||||||||| | |||||||||| |||||||    
T  1249054 tgagactcacatggatttcatccaataaaatagtgagtgttagaaaaagagtgttcctatcatttct 1248988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 12520043 - 12519969
Alignment:
Q  130 acactttggaaatgaatttcacataaaatgg--tgagactcacatagatttcacctaataagaaagtgattgtta 202  Q
    ||||||| ||||||||| ||||||||| |||  |||||||||||| ||||||||||||||| | ||||| |||||    
T  12520043 acactttcgaaatgaatctcacataaagtggcttgagactcacatggatttcacctaataaaagagtgaatgtta 12519969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 33440609 - 33440512
Alignment:
Q  130 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 227  Q
    |||| ||||||||| ||  |||||||| ||||||||| |||||   |||||||||||| || ||||| ||||||||||| | | |||||| |||||||    
T  33440609 acacattggaaatggatcccacataaagtggtgagacccacatgagtttcacctaataggagagtgagtgttagaaagagaatattcctagcatttct 33440512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 321 - 432
Target Start/End: Original strand, 11473504 - 11473615
Alignment:
Q  321 gttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactct 420  Q
    |||||||  |||| ||||| |||||  ||||| | |||| |||||| ||| | |||||||  |||| ||||||||||||||||| || ||||||||||||    
T  11473504 gttgtgtcgatgtcaagagaacaagcttcccaatgcaaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactct 11473603  T
Q  421 atacggacaggt 432  Q
    ||| ||| ||||    
T  11473604 atatggaaaggt 11473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 432
Target Start/End: Original strand, 11485773 - 11485886
Alignment:
Q  319 tggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaact 418  Q
    |||||||||| |||| || ||  ||||  ||||| | |||| |||||| ||||| |||||||  |||| |||||| |||||||||| || ||||||||||    
T  11485773 tggttgtgttgatgtcaaaagagcaagcttcccaatgcaaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaact 11485872  T
Q  419 ctatacggacaggt 432  Q
    ||||| ||| ||||    
T  11485873 ctatatggaaaggt 11485886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 9132327 - 9132268
Alignment:
Q  149 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaaga 208  Q
    |||||||||||||||||| ||| | | ||||||| ||||||| ||||| |||||||||||    
T  9132327 cacataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttagaaaga 9132268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 38602903 - 38602981
Alignment:
Q  149 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 227  Q
    |||||||| | |||||||||||||   ||||||| |||| || ||||| || ||||||||||||||||||| |||||||    
T  38602903 cacataaagtagtgagactcacatgagtttcacccaataggagagtgagtgctagaaagaaagtgttcctagcatttct 38602981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 54140814 - 54140883
Alignment:
Q  135 ttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttaga 204  Q
    ||||||||| ||  |||||||| ||||||||||| |||  |||||||||||||||| ||||| |||||||    
T  54140814 ttggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgttaga 54140883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 44477880 - 44477938
Alignment:
Q  130 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataa 188  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||| ||| | |||||||    
T  44477880 acactttagaaatgaatttcacataaaatggcgagactcgcataggttttatctaataa 44477938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 22786258 - 22786192
Alignment:
Q  130 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtga 196  Q
    |||||||||||||| |   |||||||| |||||||||  |||| ||||||||||||||| |||||||    
T  22786258 acactttggaaatggaacccacataaagtggtgagacatacattgatttcacctaataaaaaagtga 22786192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 29310527 - 29310449
Alignment:
Q  130 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaaga 208  Q
    ||||| |||||||| ||  |||||||| ||||||||| |||||   ||||||| ||||| ||||||| |||||||||||    
T  29310527 acactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttagaaaga 29310449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University