View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4909-Insertion-13 (Length: 193)

Name: NF4909-Insertion-13
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4909-Insertion-13
NF4909-Insertion-13
[»] chr1 (10 HSPs)
chr1 (22-138)||(42562186-42562302)
chr1 (130-193)||(22826211-22826274)
chr1 (130-193)||(24721582-24721645)
chr1 (130-193)||(39051697-39051760)
chr1 (130-193)||(45473399-45473461)
chr1 (130-184)||(6832529-6832583)
chr1 (139-193)||(18119880-18119933)
chr1 (139-193)||(44890781-44890834)
chr1 (130-193)||(28478431-28478494)
chr1 (133-181)||(17904873-17904921)
[»] chr3 (6 HSPs)
chr3 (130-193)||(1209572-1209635)
chr3 (130-193)||(11189624-11189687)
chr3 (130-193)||(45804984-45805048)
chr3 (130-193)||(12539620-12539683)
chr3 (130-193)||(50757141-50757204)
chr3 (130-193)||(6145350-6145414)
[»] chr6 (7 HSPs)
chr6 (131-193)||(18981719-18981781)
chr6 (130-193)||(19233766-19233829)
chr6 (130-193)||(25917228-25917291)
chr6 (130-193)||(21681171-21681234)
chr6 (130-191)||(22555372-22555433)
chr6 (130-193)||(19257571-19257635)
chr6 (132-181)||(18458829-18458878)
[»] scaffold0174 (3 HSPs)
scaffold0174 (130-193)||(14391-14454)
scaffold0174 (130-159)||(3280-3309)
scaffold0174 (130-159)||(9402-9431)
[»] scaffold0007 (1 HSPs)
scaffold0007 (130-193)||(17914-17977)
[»] scaffold0004 (2 HSPs)
scaffold0004 (130-193)||(73862-73925)
scaffold0004 (130-193)||(64412-64475)
[»] chr7 (8 HSPs)
chr7 (130-193)||(4692410-4692473)
chr7 (130-193)||(24271437-24271500)
chr7 (130-193)||(14154622-14154685)
chr7 (132-193)||(19194475-19194536)
chr7 (130-193)||(9255343-9255408)
chr7 (130-193)||(9314842-9314907)
chr7 (139-193)||(11315598-11315652)
chr7 (130-193)||(43746775-43746839)
[»] chr5 (12 HSPs)
chr5 (130-193)||(22110173-22110236)
chr5 (130-193)||(6552413-6552476)
chr5 (130-193)||(16605932-16605995)
chr5 (130-193)||(18743400-18743463)
chr5 (130-193)||(26748378-26748441)
chr5 (130-193)||(31621470-31621533)
chr5 (130-193)||(12354401-12354465)
chr5 (130-192)||(660035-660097)
chr5 (139-181)||(16220858-16220900)
chr5 (130-181)||(16221767-16221819)
chr5 (130-169)||(16223261-16223301)
chr5 (130-193)||(16061967-16062030)
[»] scaffold0231 (1 HSPs)
scaffold0231 (130-193)||(19625-19688)
[»] scaffold0123 (1 HSPs)
scaffold0123 (130-193)||(15200-15263)
[»] scaffold0056 (1 HSPs)
scaffold0056 (130-193)||(14741-14804)
[»] scaffold0054 (1 HSPs)
scaffold0054 (130-193)||(66919-66982)
[»] chr8 (9 HSPs)
chr8 (130-193)||(17980173-17980236)
chr8 (130-193)||(18820925-18820988)
chr8 (130-193)||(22480765-22480828)
chr8 (130-191)||(22343377-22343438)
chr8 (130-191)||(22355037-22355098)
chr8 (130-171)||(4382101-4382142)
chr8 (130-193)||(6574803-6574867)
chr8 (130-193)||(21512634-21512698)
chr8 (130-193)||(2718523-2718586)
[»] chr4 (10 HSPs)
chr4 (130-193)||(45315920-45315983)
chr4 (130-193)||(55581635-55581698)
chr4 (132-193)||(42876632-42876693)
chr4 (130-193)||(35658872-35658935)
chr4 (143-191)||(14628617-14628665)
chr4 (130-180)||(12621616-12621666)
chr4 (139-193)||(30139032-30139085)
chr4 (139-191)||(2425904-2425955)
chr4 (130-169)||(44025319-44025358)
chr4 (139-181)||(46739393-46739435)
[»] chr2 (6 HSPs)
chr2 (130-193)||(25588376-25588439)
chr2 (130-187)||(21328591-21328648)
chr2 (130-187)||(1385629-1385686)
chr2 (130-187)||(21337520-21337577)
chr2 (130-193)||(44761450-44761515)
chr2 (130-193)||(22685073-22685137)
[»] scaffold1223 (1 HSPs)
scaffold1223 (130-193)||(1407-1470)
[»] scaffold0213 (1 HSPs)
scaffold0213 (130-193)||(17401-17464)
[»] scaffold0108 (1 HSPs)
scaffold0108 (130-193)||(8727-8790)
[»] scaffold0063 (1 HSPs)
scaffold0063 (130-193)||(60947-61010)
[»] scaffold0401 (1 HSPs)
scaffold0401 (130-193)||(7147-7211)
[»] scaffold0742 (1 HSPs)
scaffold0742 (131-193)||(2299-2361)
[»] scaffold0379 (2 HSPs)
scaffold0379 (130-184)||(8883-8937)
scaffold0379 (130-184)||(16075-16129)
[»] scaffold0048 (1 HSPs)
scaffold0048 (130-193)||(55264-55328)
[»] scaffold0005 (1 HSPs)
scaffold0005 (143-191)||(188718-188766)
[»] scaffold0059 (1 HSPs)
scaffold0059 (130-193)||(48493-48556)
[»] scaffold0178 (1 HSPs)
scaffold0178 (130-181)||(858-909)
[»] scaffold0261 (1 HSPs)
scaffold0261 (130-169)||(8036-8075)
[»] scaffold0100 (1 HSPs)
scaffold0100 (130-159)||(10824-10853)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 42562186 - 42562302
Alignment:
Q  22 agtcgattgcacgcgttaaactaactcactctatcagcaaccaagctagggtatgctagttttatatacgacaatctcaataatatcaatccttacatgt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42562186 agtcgattgcacgcgttaaactaactcactctatcagcaaccaagttagggtatgctagttttatatacgacaatctcaataatatcaatccttacatgt 42562285  T
Q  122 ctgctttgtatttattt 138  Q
    ||||||||||| |||||    
T  42562286 ctgctttgtatctattt 42562302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 22826274 - 22826211
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  22826274 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaatatttcattat 22826211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 24721645 - 24721582
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  24721645 tatttatttaaaaatctttcatcaataattcaaattacatcgcaacggaaaaacatttcattat 24721582  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 39051697 - 39051760
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||    
T  39051697 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaacttttctttat 39051760  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 45473399 - 45473461
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  45473399 tatttattcaaacatcttttatcaataattcaaattacatcgcagcgg-aaaacatttcattat 45473461  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 6832529 - 6832583
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaaca 184  Q
    ||||||||||||||||||||||||||||||||||||||||  || ||||||||||    
T  6832529 tatttatttaaacatcttttatcaataattcaaattacattgcagcggaaaaaca 6832583  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 18119880 - 18119933
Alignment:
Q  139 aaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  18119880 aaacatcttttatcaataattcaaattacatcgcagcgg-aaaacatttcattat 18119933  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 44890781 - 44890834
Alignment:
Q  139 aaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  44890781 aaacatcttttatcaataattcaaattacattacagcgg-aaaacatttcattat 44890834  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 28478494 - 28478431
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||| ||| ||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  28478494 tatttattcaaatcatcttttatcaataattcaaattacatcgcagcgg-aaaacatttcattat 28478431  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 17904921 - 17904873
Alignment:
Q  133 ttatttaaacatcttttatcaataattcaaattacatcacaacggaaaa 181  Q
    |||||||||||||||| |||||||||| |||||||||| |||| |||||    
T  17904921 ttatttaaacatctttcatcaataatttaaattacatcgcaacagaaaa 17904873  T

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Target: chr3 (Bit Score: 60; Significance: 8e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 1209635 - 1209572
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1209635 tatttatttaaacatcttttatcaataattcaaattacatcgcaacggaaaaacatttcattat 1209572  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 11189624 - 11189687
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||    
T  11189624 tatttatttaaacatctttcatcaataattcaaattacattgcagcggaaaaacatttcattat 11189687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 45805048 - 45804984
Alignment:
Q  130 tatttatttaaacatctttt-atcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||||    
T  45805048 tatttatttaaacatctttttatcaataattcaaattacatcgcagcgtaaaaacatttcattat 45804984  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 12539620 - 12539683
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||||||||||||||||||| |||||||||  || | |||||||||||||||||    
T  12539620 tatttatttaaacatcttttatcaataattaaaattacattgcagcagaaaaacatttcattat 12539683  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 50757204 - 50757141
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| ||||||||||||||||||||||||  || || |||||||| ||||||||||    
T  50757204 tatttatttaaatatcttttatcaataattcaaattaactcgcagcggaaaaatatttcattat 50757141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 6145350 - 6145414
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| || ||||||||||||||| |||||||||| || | |||||||||||||||||    
T  6145350 tatttatttaaaacaacttttatcaataatttaaattacatcgcagcagaaaaacatttcattat 6145414  T

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Target: chr6 (Bit Score: 59; Significance: 3e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 18981719 - 18981781
Alignment:
Q  131 atttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18981719 atttatttaaacatcttttatcaataattcaaattacatcacaccggaaaaacatttcattat 18981781  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 19233766 - 19233829
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  19233766 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 19233829  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 25917228 - 25917291
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  25917228 tatttatttaaacatcttttatcaataattcaaattacatcgcaccggaaaaacatttcattat 25917291  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 21681234 - 21681171
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  21681234 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 21681171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 22555372 - 22555433
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcatt 191  Q
    ||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||||||    
T  22555372 tatttatttaaacatctttcatcaataattcaaattacaacgcagcggaaaaacatttcatt 22555433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 19257571 - 19257635
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  19257571 tatttatttaaaacatcttttatcaataattcaaattacaacgcagcggaaaaacatttcattat 19257635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 18458878 - 18458829
Alignment:
Q  132 tttatttaaacatcttttatcaataattcaaattacatcacaacggaaaa 181  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||||||    
T  18458878 tttatttaaacatcttttatcaataattcaatttacatcgcagcggaaaa 18458829  T

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Target: scaffold0174 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 14391 - 14454
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  14391 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 14454  T

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Target: scaffold0174; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 3280 - 3309
Alignment:
Q  130 tatttatttaaacatcttttatcaataatt 159  Q
    ||||||||||||||||||||||||||||||    
T  3280 tatttatttaaacatcttttatcaataatt 3309  T

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Target: scaffold0174; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 9402 - 9431
Alignment:
Q  130 tatttatttaaacatcttttatcaataatt 159  Q
    ||||||||||||||||||||||||||||||    
T  9402 tatttatttaaacatcttttatcaataatt 9431  T

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Target: scaffold0007 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 17977 - 17914
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  17977 tatttatttaaacatcttttatcaataattaaaattacatcacagcggaaaaacatttcattat 17914  T

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Target: scaffold0004 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 73862 - 73925
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  73862 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 73925  T

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Target: scaffold0004; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 64412 - 64475
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |||||||    
T  64412 tatttatttaaacatcttttatcaataattcaaattacatcgcagtggaaaaacatctcattat 64475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 4692473 - 4692410
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  4692473 tatttatttaaacatctttcatcaataattcaaattacatcgcaacggaaaaacatttcattat 4692410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 24271500 - 24271437
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  24271500 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 24271437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 14154685 - 14154622
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  14154685 tatttatttaaacatcttttatcaataattcaacttacatcgcagcggaaaaacatttcattat 14154622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 19194475 - 19194536
Alignment:
Q  132 tttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  19194475 tttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 19194536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 9255343 - 9255408
Alignment:
Q  130 tatttatttaaacatctttt--atcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||| ||||  ||||||||||||||||||||| || |||||||||||||||||||    
T  9255343 tatttatttaaacattttttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 9255408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 9314907 - 9314842
Alignment:
Q  130 tatttatttaaacatctttt--atcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||| ||||  ||||||||||||||||||||| || |||||||||||||||||||    
T  9314907 tatttatttaaacattttttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 9314842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 11315652 - 11315598
Alignment:
Q  139 aaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  11315652 aaacatcttttatcaataattcaaatcacatcgcagcggaaaaacatttcattat 11315598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 43746775 - 43746839
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacgga-aaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||  || |||| |||||||||||||||    
T  43746775 tatttatttaaacatctttcatcaataattcaaattacattgcaccggacaaaacatttcattat 43746839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 22110173 - 22110236
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  22110173 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 22110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 6552476 - 6552413
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  6552476 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 6552413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 16605995 - 16605932
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  16605995 tatttatttaaacatcttttatcaataattcaaattacatcgcagcggaaaaaaatttcattat 16605932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 18743400 - 18743463
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  18743400 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 18743463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 26748378 - 26748441
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  26748378 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 26748441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 31621470 - 31621533
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||    
T  31621470 tatttatttaaacatcttttatcaataattcaaattacatcgctgcggaaaaacatttcattat 31621533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 12354401 - 12354465
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  12354401 tatttatttaaaacatcttttatcaataattcaaattacatctcaggggaaaaacatttcattat 12354465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 660035 - 660097
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcatta 192  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || ||||||||| | ||||||    
T  660035 tatttatttaaacatttttcatcaataattcaaattacatcgcagcggaaaaacttgtcatta 660097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 16220858 - 16220900
Alignment:
Q  139 aaacatcttttatcaataattcaaattacatcacaacggaaaa 181  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  16220858 aaacatcttttatcaataattcaaattacatcgcagcggaaaa 16220900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 16221767 - 16221819
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaa 181  Q
    |||||||||||| || |||||||||||||||||||||||||| || |||||||    
T  16221767 tatttatttaaaacaacttttatcaataattcaaattacatcgcagcggaaaa 16221819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 16223261 - 16223301
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacat 169  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  16223261 tatttatttaaaacatcttttatcaataattcaaattacat 16223301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 16061967 - 16062030
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||| ||||||||  | |||| ||||||||||||||  || |||||||||||||||||||    
T  16061967 tatttattcaaacatctcatgtcaacaattcaaattacattgcagcggaaaaacatttcattat 16062030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 19688 - 19625
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  19688 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 19625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 15200 - 15263
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  15200 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 15263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 14741 - 14804
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  14741 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 14804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 66982 - 66919
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  66982 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 66919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 17980236 - 17980173
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  17980236 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 17980173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 18820988 - 18820925
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  18820988 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 18820925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 22480828 - 22480765
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||    
T  22480828 tatttatttaaacatattttatcaataattcaaattacatcgtagcggaaaaacatttcattat 22480765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 22343377 - 22343438
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcatt 191  Q
    ||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||    
T  22343377 tatttatttaaacatattttatcaataattcaaattacattgcagcggaaaaacatttcatt 22343438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 22355037 - 22355098
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcatt 191  Q
    ||||||||||||||| ||||||||||||||||||||||||  || |||||||||||||||||    
T  22355037 tatttatttaaacatattttatcaataattcaaattacattgcagcggaaaaacatttcatt 22355098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 4382142 - 4382101
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatca 171  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  4382142 tatttatttaaacatctttcatcaataattcaaattacatca 4382101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 6574867 - 6574803
Alignment:
Q  130 tatttatttaaac-atcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||  |||||||||||||||||||||||||||  || |||||||||||||| ||||    
T  6574867 tatttatttaaaatatcttttatcaataattcaaattacattgcagcggaaaaacatttctttat 6574803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 21512634 - 21512698
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattaca-tcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||| ||| ||||||||||||||||||| |  || |||||||||||||||||||    
T  21512634 tatttatttaaacatatttcatcaataattcaaattacatttgcagcggaaaaacatttcattat 21512698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 2718586 - 2718523
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| || ||| |||||||||||||||||||||  | | ||||||||||| |||||    
T  2718586 tatttatttaaatatttttcatcaataattcaaattacatcgtagcagaaaaacattttattat 2718523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 45315983 - 45315920
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  45315983 tatttatttaaacatcttttatcaataattcaaattacatcgcagtggaaaaacatttcattat 45315920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 55581635 - 55581698
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  55581635 tatttatttaaacattttttatcaataattcaaattacatcgcagcggaaaaacatttcattat 55581698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 42876693 - 42876632
Alignment:
Q  132 tttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||||    
T  42876693 tttatttaaacatctttcatcaataatttaaattacatcgcagcggaaaaacatttcattat 42876632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 35658872 - 35658935
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| |||||||||| |||||||||  |||||||||||||||| |||||    
T  35658872 tatttatttaaacatctttcatcaataatttaaattacattgcaacggaaaaacatttgattat 35658935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 14628617 - 14628665
Alignment:
Q  143 atcttttatcaataattcaaattacatcacaacggaaaaacatttcatt 191  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||    
T  14628617 atcttttatcaataattcaaattacatcgcagcggaaaaacatttcatt 14628665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 12621616 - 12621666
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaa 180  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  12621616 tatttatttaaacaacttttatcaataattcaaattacatcgcagcggaaa 12621666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 30139032 - 30139085
Alignment:
Q  139 aaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  30139032 aaacatcttttatcaataattcaaattacatcgcagcgg-aaaacatttcattat 30139085  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 2425955 - 2425904
Alignment:
Q  139 aaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcatt 191  Q
    |||||||||||||||||||||||||||||||| || ||| |||||||||||||    
T  2425955 aaacatcttttatcaataattcaaattacatcgcagcgg-aaaacatttcatt 2425904  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 44025358 - 44025319
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacat 169  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  44025358 tatttatttaaacatattttatcaataattcaaattacat 44025319  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 46739393 - 46739435
Alignment:
Q  139 aaacatcttttatcaataattcaaattacatcacaacggaaaa 181  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  46739393 aaacatcttttatcaataattcaaattacatcgcagcggaaaa 46739435  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 25588439 - 25588376
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  25588439 tatttatttaaacatcttttatcaataattcaaattacatcgcagtggaaaaacatttcattat 25588376  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 21328648 - 21328591
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacattt 187  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  21328648 tatttatttaaacatctttcatcaataattcaaattacatcgcaacggaaaaacattt 21328591  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 1385686 - 1385629
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacattt 187  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  1385686 tatttatttaaacatcttttatcaataattcaacttacatcgcagcggaaaaacattt 1385629  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 21337577 - 21337520
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacattt 187  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  21337577 tatttatttaaacatctttcatcaataattcaaattacatcgcagcggaaaaacattt 21337520  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 44761450 - 44761515
Alignment:
Q  130 tatttatttaaacatcttttatcaataa--ttcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||||||||||||  ||||||||||||| || || ||||||||||||||||    
T  44761450 tatttatttaaacatcttttatcaataattttcaaattacatctcagcgaaaaaacatttcattat 44761515  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 22685073 - 22685137
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| |||||||||||||| ||||||| |||||| || || ||||||||||||||||    
T  22685073 tatttatttaaaacatcttttatcaatcattcaaaatacatcgcagcgaaaaaacatttcattat 22685137  T

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Target: scaffold1223 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 1470 - 1407
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||||    
T  1470 tatttatttaaacatatttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 1407  T

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Target: scaffold0213 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 17401 - 17464
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||    
T  17401 tatttatttaaacatctttcatcaataactcaaattacatcatagcggaaaaacatttcattat 17464  T

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Target: scaffold0108 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 8790 - 8727
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||| ||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  8790 tatttatttaagcatctttcatcaataattcaaattacatcgcagcggaaaaacatttcattat 8727  T

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Target: scaffold0063 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 60947 - 61010
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||    
T  60947 tatttatttaaacatctttgatcaataattcaaattacatcgcagcggaaaaatatttcattat 61010  T

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Target: scaffold0401 (Bit Score: 45; Significance: 7e-17; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 7147 - 7211
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||    
T  7147 tatttatttaaaacatcttttatcaataatttaaattacatcgcagcggaaaaacatttcattat 7211  T

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Target: scaffold0742 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0742
Description:

Target: scaffold0742; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 2299 - 2361
Alignment:
Q  131 atttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||| ||| ||||||||||||||||||||| || || ||||||||||||||||    
T  2299 atttatttaaacatttttcatcaataattcaaattacatcgcaccgaaaaaacatttcattat 2361  T

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Target: scaffold0379 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 8883 - 8937
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaaca 184  Q
    ||||||||||||||||||||||||||||||||||||||||  || ||||||||||    
T  8883 tatttatttaaacatcttttatcaataattcaaattacattgcagcggaaaaaca 8937  T

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Target: scaffold0379; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 16075 - 16129
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaaca 184  Q
    ||||||||||||||||||||||||||||||||||||||||  || ||||||||||    
T  16075 tatttatttaaacatcttttatcaataattcaaattacattgcagcggaaaaaca 16129  T

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Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 55264 - 55328
Alignment:
Q  130 tatttatttaaa-catcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||| |||||||||||||||||||||| |||||| || |||||||| ||||||||||    
T  55264 tatttatttaaaacatcttttatcaataattcaaactacatcgcagcggaaaaatatttcattat 55328  T

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Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 188766 - 188718
Alignment:
Q  143 atcttttatcaataattcaaattacatcacaacggaaaaacatttcatt 191  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||    
T  188766 atcttttatcaataattcaaattacatcgcagcggaaaaacatttcatt 188718  T

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Target: scaffold0059 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 48493 - 48556
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaaacatttcattat 193  Q
    |||||||||||||||||||||| ||||||| |||||||||| || | |||||| ||||||||||    
T  48493 tatttatttaaacatcttttataaataattaaaattacatcgcagctgaaaaatatttcattat 48556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 909 - 858
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacatcacaacggaaaa 181  Q
    ||||||||||||||||||||||||||||||||| ||| ||| || |||||||    
T  909 tatttatttaaacatcttttatcaataattcaatttatatcgcagcggaaaa 858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 8075 - 8036
Alignment:
Q  130 tatttatttaaacatcttttatcaataattcaaattacat 169  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  8075 tatttatttaaacatattttatcaataattcaagttacat 8036  T

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Target: scaffold0100 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 10853 - 10824
Alignment:
Q  130 tatttatttaaacatcttttatcaataatt 159  Q
    ||||||||||||||||||||||||||||||    
T  10853 tatttatttaaacatcttttatcaataatt 10824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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