View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4909-Insertion-2 (Length: 728)

Name: NF4909-Insertion-2
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4909-Insertion-2
NF4909-Insertion-2
[»] chr5 (7 HSPs)
chr5 (344-617)||(33826104-33826379)
chr5 (137-344)||(33827438-33827646)
chr5 (159-240)||(11128878-11128959)
chr5 (167-290)||(33544933-33545056)
chr5 (29-182)||(41360529-41360681)
chr5 (210-284)||(17895633-17895707)
chr5 (158-314)||(34153983-34154140)
[»] chr2 (4 HSPs)
chr2 (38-334)||(44686046-44686342)
chr2 (126-315)||(27648323-27648511)
chr2 (27-260)||(26690469-26690699)
chr2 (126-314)||(36338909-36339097)
[»] chr8 (3 HSPs)
chr8 (27-303)||(15051497-15051770)
chr8 (138-290)||(24542656-24542808)
chr8 (209-262)||(30181992-30182045)
[»] chr1 (5 HSPs)
chr1 (126-326)||(47833768-47833969)
chr1 (26-290)||(25588692-25588955)
chr1 (200-289)||(2079111-2079200)
chr1 (27-62)||(6055023-6055058)
chr1 (126-186)||(26310398-26310456)
[»] chr3 (8 HSPs)
chr3 (30-290)||(24734169-24734428)
chr3 (469-617)||(53837867-53838016)
chr3 (470-608)||(53834289-53834427)
chr3 (126-285)||(53837503-53837662)
chr3 (126-289)||(53833905-53834068)
chr3 (201-260)||(3083794-3083853)
chr3 (189-289)||(16196740-16196840)
chr3 (212-289)||(7910323-7910400)
[»] chr6 (5 HSPs)
chr6 (134-278)||(353014-353158)
chr6 (61-317)||(14802748-14803009)
chr6 (90-290)||(12273587-12273786)
chr6 (34-226)||(31405545-31405736)
chr6 (167-245)||(31984838-31984916)
[»] chr4 (2 HSPs)
chr4 (126-314)||(54572844-54573020)
chr4 (678-728)||(42564122-42564172)
[»] scaffold0210 (1 HSPs)
scaffold0210 (21-112)||(15162-15252)
[»] chr7 (2 HSPs)
chr7 (138-314)||(38787044-38787219)
chr7 (210-278)||(4648282-4648350)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 344 - 617
Target Start/End: Complemental strand, 33826379 - 33826104
Alignment:
Q  344 taagatatgaaagaagacattgtacttcagcaacctatattcttt-ctgcnnnnnnncacactgatcccaatccactatatatacta-catatgcacata 441  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||| || |       |||||||||||||||||||||||||| ||| | ||||||||||    
T  33826379 taagagatgaaagaagacattgtaattcagcaacctatattattttctcctcttttacacactgatcccaatccactatatatgctatcgtatgcacata 33826280  T
Q  442 aaaattagttcctatttaagtggaaattgaaaccgaaagtacagtagaaagattcaaagctttcaatgatatgaccaagtgaattgcaactgccattttg 541  Q
    |||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33826279 aaaaatagttcctatttaagtggaaattgaaaccgtgagtgcagtagaaagattcaaagctttcaatgatatgaccaagtgaattgcaactgccatttta 33826180  T
Q  542 actaggtagtgtaataaataaaaacgtgcatgacttggagtataaataggaaacacataggataccaagtcaagag 617  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33826179 actaggtagtgtaataaataaaaacgtgcatgacttggaatataaataggaaacacataggataccaagtcaagag 33826104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 137 - 344
Target Start/End: Complemental strand, 33827646 - 33827438
Alignment:
Q  137 attgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggat 236  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  33827646 attgactgaggcgtgcacgaagcactgggcttaagagtattttgccaccccggatgaatcacctgatgcgataggtctcatagataatactctccaggat 33827547  T
Q  237 acaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa-cacttatggatgctcttgggaacttataacttgttattagtgactat 335  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  33827546 acaacaatcgcttcttgctagcaccgcacgtggattagcaaggtctcaagaatcacttatggatgctcttgggaacttataatttattattagtgactat 33827447  T
Q  336 aaagaaaat 344  Q
    || ||||||    
T  33827446 aatgaaaat 33827438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 11128878 - 11128959
Alignment:
Q  159 cactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggatacaa 240  Q
    |||||| ||||||||||||| |||||| |||||| |||||| |||||| | ||||||||||||| || ||||||||||||||    
T  11128878 cactggacttaagagtattttgccaccacggatggatcatccgatgcggttggtctcatagctagtattctccaggatacaa 11128959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 33544933 - 33545056
Alignment:
Q  167 ttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcactgcacg 266  Q
    |||||||||||| | ||||  ||||| |||| |||||| | | ||||||||||||| ||||||||| |||||| ||||| | |||||||||||  |||||    
T  33544933 ttaagagtatttaggcaccatggatggatcacctgatgtggttggtctcatagctagtactctccatgatacagcagtcacatcttgctagcatcgcacg 33545032  T
Q  267 tggattagcaagatctcaggaaca 290  Q
    || ||||| || || |||||||||    
T  33545033 tgaattagaaaaatatcaggaaca 33545056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 41360681 - 41360529
Alignment:
Q  29 aaaaattagacatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaacaaaacact 128  Q
    |||||||| | |||||||  |||||||||||||| |||| || ||||||||||| || ||||||||| ||||||| | |||||| | |||| | || |||    
T  41360681 aaaaattaaatatagaattcttataaataataaa-tcaaacacaaatataagcataaataaatatgactcttcatcacattaaacaaagaatagaaaact 41360583  T
Q  129 tatc--cattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgcc 182  Q
    ||||    ||||||||| |||||||  | | ||| |||||||||||||||||||||    
T  41360582 tatcattgttattgactcaggcgtg--caatgcaatgggcttaagagtatttcgcc 41360529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 17895707 - 17895633
Alignment:
Q  210 ggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctca 284  Q
    ||||||| ||||| ||||||||||||||||||| || |||||||||| ||| |||| || | ||||||| |||||    
T  17895707 ggtctcacagctagtactctccaggatacaacaatcacttcttgctaacaccgcacatgaactagcaaggtctca 17895633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 314
Target Start/End: Original strand, 34153983 - 34154140
Alignment:
Q  158 gcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctag 257  Q
    |||||||||||||||| ||||||||||| | | | ||| | |||||||  | || |||| ||||| | |||||||||||||||||| | ||| |  |||     
T  34153983 gcactgggcttaagagcatttcgccaccacaggtcaatgacctgatgcagttggcctcaaagctagtgctctccaggatacaacagccacttttcactaa 34154082  T
Q  258 cactgcacgtggattagcaagatctcaggaa-cacttatggatgctcttgggaactta 314  Q
    ||||||||||| |  ||||||  | |||||| ||||  ||||||||| ||||||||||    
T  34154083 cactgcacgtgaaccagcaagggcacaggaaccactattggatgctcatgggaactta 34154140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 38 - 334
Target Start/End: Original strand, 44686046 - 44686342
Alignment:
Q  38 acatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaacaaaacacttatccatta 137  Q
    ||||||||||||||||  | ||||| |||| || ||||||||| |||| ||||||||| | ||||| |||||||| |||||| | || |||| || ||||    
T  44686046 acatagaatcattatatttgataaa-tcaaacacaaatataagaacaagtaaatatgactgttcatcaaattaaatagagaatagaaaacttctcgatta 44686144  T
Q  138 ttgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggata 237  Q
    ||||||||||| || |  | |||||||||||||||||||||||||||| ||||| | | ||| |||||||||||||||||||||||||||||||||||||    
T  44686145 ttgactgaggcatgcaaaatgcactgggcttaagagtatttcgccacctcggataagttatccgatgcgataggtctcatagctaatactctccaggata 44686244  T
Q  238 caacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa-cacttatggatgctcttgggaacttataacttgttattagtgacta 334  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||    
T  44686245 caacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaatcacttatggatgcttatgggaacttataatttgttattagtgacta 44686342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 126 - 315
Target Start/End: Complemental strand, 27648511 - 27648323
Alignment:
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaata 225  Q
    ||||||| |||||||| ||||||||| |  | ||| ||| ||||| ||||||||||||||  |||| ||| ||| |||||||||||||||||||||||||    
T  27648511 acttatcgattattgattgaggcgtgga--atgcattggacttaaaagtatttcgccaccttggataaattatccgatgcgataggtctcatagctaata 27648414  T
Q  226 ctctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa-cacttatggatgctcttgggaacttat 315  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||  || ||||||||||||||| |||||||||||    
T  27648413 ctctccaggatacaacagtcgcttcttgctagcaccgcacatggattaacaaggtctcaaaaaccacttatggatgctcatgggaacttat 27648323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 26690469 - 26690699
Alignment:
Q  27 ggaaaaattagacatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaacaaaaca 126  Q
    |||||||||||||||| |||||||| |||||||||| |||| || ||||||| |||||| ||||||||||||||||| |||||||| | |||| |||| |    
T  26690469 ggaaaaattagacatataatcattacaaataataaa-tcaaacacaaatatatgcacaaataaatatgattcttcatcaaattaaataaagaataaaaaa 26690567  T
Q  127 cttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatac 226  Q
    |||||| |||||||| |||||||||||  |  || ||| |||||||||||||| |||||  ||||   | ||| |||||  | ||||||||||||| |||    
T  26690568 cttatcgattattgaatgaggcgtgta--atacattggacttaagagtatttcaccaccatggataggttatccgatgcagttggtctcatagctagtac 26690665  T
Q  227 tctccaggatacaacagtcgcttcttgctagcac 260  Q
    |||| |  |||||||| ||  || ||||||||||    
T  26690666 tctctataatacaacaatcattttttgctagcac 26690699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 126 - 314
Target Start/End: Original strand, 36338909 - 36339097
Alignment:
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaata 225  Q
    ||||||| | |||||||||||||||| ||||||||||||  ||||||||||||||||| | || ||   | | | |||||  ||| |||| | |||| ||    
T  36338909 acttatcgaatattgactgaggcgtgcacgaagcactggt-ttaagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagta 36339007  T
Q  226 ctctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa-cacttatggatgctcttgggaactta 314  Q
    ||||||||||||||||||||  ||||||||||||| ||| ||| ||||| ||| |||||| || ||||| || |||||| ||| ||||||    
T  36339008 ctctccaggatacaacagtcagttcttgctagcaccgcatgtgaattagtaaggtctcagaaaccacttttgaatgctcatggaaactta 36339097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 3e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 27 - 303
Target Start/End: Complemental strand, 15051770 - 15051497
Alignment:
Q  27 ggaaaaattagacatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaacaaaaca 126  Q
    ||||||||||||||  ||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||    
T  15051770 ggaaaaattagaca--gaatcattataaataataaaatcaaacacaaatataaacacaattaaatatgactcttcatgaaattaaaaagagaacaaaaca 15051673  T
Q  127 cttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatac 226  Q
    |||||| ||||||||||||| ||||  | | ||| |||| ||||||||||||||||| ||||||| | | ||| |||||||||| |||||||||||||||    
T  15051672 cttatcgattattgactgagacgtg--caatgcattgggtttaagagtatttcgccatcccggataagttatccgatgcgatagatctcatagctaatac 15051575  T
Q  227 -tctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa-cacttatggatgctc 303  Q
     ||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||    
T  15051574 ttctccagaata-aacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcagaaaccacttatggatgctc 15051497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 138 - 290
Target Start/End: Complemental strand, 24542808 - 24542656
Alignment:
Q  138 ttgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggata 237  Q
    |||||||||||||| |  | ||| ||| ||||||||||||| ||||   |||||| |||||| |||||| | | ||||||||||| |||||||||| |||    
T  24542808 ttgactgaggcgtgcaaaatgcattggacttaagagtattttgccattacggatggatcatccgatgcggttgatctcatagctagtactctccagaata 24542709  T
Q  238 caacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaaca 290  Q
    ||||| ||   |||||||||||| ||||||| ||||||||| ||||| |||||    
T  24542708 caacaatcatatcttgctagcaccgcacgtgaattagcaaggtctcatgaaca 24542656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 30181992 - 30182045
Alignment:
Q  209 aggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcactg 262  Q
    ||||||||| |||| |||||| || |||||||||||| ||||||||||||||||    
T  30181992 aggtctcattgctagtactctgcaagatacaacagtcacttcttgctagcactg 30182045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 126 - 326
Target Start/End: Complemental strand, 47833969 - 47833768
Alignment:
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaata 225  Q
    ||||||| ||||||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  47833969 acttatcgattattgactgaggcatgcatgaagcattgggcttaagagtatttcgccaccccggatgaatcatccgatgcaataggtctcatagctaata 47833870  T
Q  226 ctctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa-cacttatggatgctcttgggaacttataacttgtta 324  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| | || |||||| || ||||||||||||||| ||||||||||||| ||||||    
T  47833869 ctctccagaatacaacagtcgcttcttgctagcaccgcacgtggattaacgaggtctcagaaaccacttatggatgctcatgggaacttataatttgtta 47833770  T
Q  325 tt 326  Q
    ||    
T  47833769 tt 47833768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 26 - 290
Target Start/End: Complemental strand, 25588955 - 25588692
Alignment:
Q  26 aggaaaaattagacatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaacaaaac 125  Q
    ||||||||||||||||||||| ||||||||  ||||||| ||  | |||||| ||||||| ||||||||||||||||| |||||||| |||||| | ||     
T  25588955 aggaaaaattagacatagaattattataaagtataaaattaaagaaaaatattagcacaaataaatatgattcttcatcaaattaaatagagaatagaaa 25588856  T
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaata 225  Q
    ||||||| |||||||||| ||| ||| ||  || |||  ||||||||||||||||||||| || ||  || ||  ||| || ||| ||||||||||| ||    
T  25588855 acttatcgattattgactaaggtgtgcacatagtactttgcttaagagtatttcgccaccacgaatagattattcgatacggtagatctcatagctagta 25588756  T
Q  226 ctctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaaca 290  Q
    |||||||| |||| || ||| |||||||||||||| ||||||| ||||||||| ||||| |||||    
T  25588755 ctctccagaatac-acggtcacttcttgctagcaccgcacgtgaattagcaaggtctcatgaaca 25588692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 2079111 - 2079200
Alignment:
Q  200 tgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaac 289  Q
    ||||||| | |||||||||||||||| ||||||||||||||||||| | |||| ||| ||| ||||||  ||||||||| ||||| ||||    
T  2079111 tgatgcggttggtctcatagctaatattctccaggatacaacagtcacgtcttactaacaccgcacgtaaattagcaaggtctcatgaac 2079200  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 6055023 - 6055058
Alignment:
Q  27 ggaaaaattagacatagaatcattataaataataaa 62  Q
    ||||||||||||||||||||||||||||||||||||    
T  6055023 ggaaaaattagacatagaatcattataaataataaa 6055058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 26310398 - 26310456
Alignment:
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccc 186  Q
    ||||||| ||||||||||||||| ||  ||| ||||| ||||||||||||||| |||||||    
T  26310398 acttatcgattattgactgaggcttg--cgatgcactaggcttaagagtattttgccaccc 26310456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 30 - 290
Target Start/End: Original strand, 24734169 - 24734428
Alignment:
Q  30 aaaattagacatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaacaaaacactt 129  Q
    ||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||  |||||| | ||||||| |||||||| |||||| | || ||||    
T  24734169 aaaattagacatagaatcattttaaataataaa-tcaaacacaaatataagcacaagcaaatataactcttcatcaaattaaatagagaatagaaaactt 24734267  T
Q  130 atccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactct 229  Q
    ||| |||||||||||||| ||| ||||||||| |  |||||||||| ||||||||||| |||   | |||||||||  ||||||||||||||||||||||    
T  24734268 atcaattattgactgaggtgtgcacgaagcaccgaacttaagagtacttcgccaccccagataggttatctgatgcagtaggtctcatagctaatactct 24734367  T
Q  230 ccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaaca 290  Q
    |||||||||||||||| | |||| ||||||| ||| ||| ||||||||| |||||| ||||    
T  24734368 ccaggatacaacagtcacatcttactagcaccgcatgtgaattagcaaggtctcagaaaca 24734428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 469 - 617
Target Start/End: Original strand, 53837867 - 53838016
Alignment:
Q  469 tgaaaccgaaagtacagtagaaagattcaaagctttcaatgatatgaccaagtgaattgcaactgccattttgactaggtagtgtaataaat-aaaaacg 567  Q
    |||||||||||||   |||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||    
T  53837867 tgaaaccgaaagtgtggtagaatgattcaaagctttcaatgttatgaccaagtgaattgcaactaccattttgaccaggtaatgtaataaataaaaaacg 53837966  T
Q  568 tgcatgacttggagtataaataggaaacacataggataccaagtcaagag 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53837967 tgcatgacttggagtataaataggaaacacataggataccaagtcaagag 53838016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 470 - 608
Target Start/End: Original strand, 53834289 - 53834427
Alignment:
Q  470 gaaaccgaaagtacagtagaaagattcaaagctttcaatgatatgaccaagtgaattgcaactgccattttgactaggtagtgtaataaataaaa-acgt 568  Q
    ||||||||||||   |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  53834289 gaaaccgaaagtgtggtagaatgattcaaagctttcaatgttatg-ccaagtgaattgcaactgccattttgactaggtaatgtaataaataaaaaacgt 53834387  T
Q  569 gcatgacttggagtataaataggaaacacataggatacca 608  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  53834388 gcatgacttggagtataaataggaaacacataggatacca 53834427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 53837503 - 53837662
Alignment:
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaata 225  Q
    ||||||| |||||||||||||||||| | |||| | |||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| |||||    
T  53837503 acttatcgattattgactgaggcgtgcatgaagtattgggcttaagagtatttcgccacctcggatgaatcatccgatgcgatagatctcatagttaata 53837602  T
Q  226 ctctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcag 285  Q
    |||| |||||||||||| || ||| |||||||||| |||  || ||||||||| ||||||    
T  53837603 ctctgcaggatacaacaatcactttttgctagcaccgcatatgaattagcaaggtctcag 53837662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 126 - 289
Target Start/End: Original strand, 53833905 - 53834068
Alignment:
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaata 225  Q
    ||||||| |||||||  ||||||||| | ||||||||||||| |||||||||| |||| ||||||| ||| | | |||||||||||||||||||||||||    
T  53833905 acttatcgattattggttgaggcgtgcatgaagcactgggctgaagagtattttgccatcccggataaataacccgatgcgataggtctcatagctaata 53834004  T
Q  226 ctctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaac 289  Q
    |||| |||||||||||| || |||||| ||||||| ||| ||| ||||||||| ||||||||||    
T  53834005 ctctgcaggatacaacaatcacttcttcctagcaccgcatgtgaattagcaaggtctcaggaac 53834068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 3083853 - 3083794
Alignment:
Q  201 gatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcac 260  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  3083853 gatgcgataggtctcatagctaatactcttcagaatacagcagtcacttcttgctagcac 3083794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 16196740 - 16196840
Alignment:
Q  189 gatgaatcatctgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa 288  Q
    |||| |||||| |||||| | ||| ||||||||| |||| |||| ||||||||| || |||||||||||||| ||| ||| |||| |||| ||||| |||    
T  16196740 gatggatcatccgatgcggttggtttcatagctagtactttccatgatacaacaatcacttcttgctagcaccgcatgtgaattaacaaggtctcatgaa 16196839  T
Q  289 c 289  Q
    |    
T  16196840 c 16196840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 7910323 - 7910400
Alignment:
Q  212 tctcatagctaatactctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaac 289  Q
    |||||| |||| |||||| ||||||||||||||| |||||||||| ||| ||| ||| | ||| ||| |||| |||||    
T  7910323 tctcatggctagtactcttcaggatacaacagtcacttcttgctaacaccgcatgtgaaatagtaaggtctcgggaac 7910400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 134 - 278
Target Start/End: Complemental strand, 353158 - 353014
Alignment:
Q  134 attattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccag 233  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||  || ||| |||||||||||||||| ||||||||||||||||    
T  353158 attattgactgaggcgtgcacgaagcactgggcttaagagtatttcgccaccccgaatagattatccgatgcgataggtctcacagctaatactctccag 353059  T
Q  234 gatacaacagtcgcttcttgctagcactgcacgtggattagcaag 278  Q
    ||||||| | || ||||||||||| |  ||||||| |||||||||    
T  353058 gatacaataatcacttcttgctagtatcgcacgtgaattagcaag 353014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 61 - 317
Target Start/End: Complemental strand, 14803009 - 14802748
Alignment:
Q  61 aaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaaca-aaacacttatccattattgactgaggcgtgtacgaagc 159  Q
    ||||||| || ||||||||||||||  ||||||||||||||||  ||||||| |||||| | ||| ||||||| ||||||| ||||||| || || || |    
T  14803009 aaatcaaacacaaatataagcacaaacaaatatgattcttcattgaattaaatagagaatagaaaaacttatcgattattggctgaggcatgcacaaaac 14802910  T
Q  160 actgggcttaagagtat----ttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgct 255  Q
    |||||| ||||||||||    || |||||| |  || | | ||  |||||||||| ||| |||||||||||||||||||||||||||  | |||||||||    
T  14802909 actgggtttaagagtatatattttgccacctcaaataagttattcgatgcgatagatctgatagctaatactctccaggatacaacaaccacttcttgct 14802810  T
Q  256 agcactgcacgtggattagcaagatctcagg-aacacttatggatgctcttgggaacttataa 317  Q
    ||||||||||||| ||||||||| | ||||| ||||||| ||||||||| ||| |||||||||    
T  14802809 agcactgcacgtgaattagcaaggtttcaggaaacactt-tggatgctcatggaaacttataa 14802748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 12273786 - 12273587
Alignment:
Q  90 atatgattcttcatgaaattaaagagagaacaaaacacttatccat--tattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccacccc 187  Q
    |||||| ||||||| |||||||| |||||| | || ||||||| ||  |||||| ||||||||| |  | |||| |||||||||||||||| |||| |||    
T  12273786 atatgactcttcatcaaattaaatagagaatagaa-acttatcgatattattgattgaggcgtgca--atgcaccgggcttaagagtattttgccatccc 12273690  T
Q  188 ggatgaatcatctgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcagga 287  Q
    ||||| |||| |  |||||||||||||||||| |||||||||  ||||||||||| || ||||||||||||||  || ||| ||||||||| ||||| ||    
T  12273689 ggatggatcacccaatgcgataggtctcatagttaatactctttaggatacaacaatcacttcttgctagcaccacatgtgaattagcaaggtctcatga 12273590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 226
Target Start/End: Original strand, 31405545 - 31405736
Alignment:
Q  34 ttagacatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaagagagaacaaaacacttatcc 133  Q
    ||||||||||||| ||||||| |||||||   ||| | |||||||||||||| || ||| |||||||||| |||||||| |||||| | || | |||||     
T  31405545 ttagacatagaattattataagtaataaatagaac-acaaatataagcacaaatatatacgattcttcatcaaattaaatagagaatagaaaatttatcg 31405643  T
Q  134 attattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatac 226  Q
    |||||||| |||| |||| |  | ||| || |||||||||||||||||||| ||| ||  || ||| |||||  |||||||||||||||||||    
T  31405644 attattgagtgagacgtgcaaaatgcattgagcttaagagtatttcgccactccgaatagattatccgatgcagtaggtctcatagctaatac 31405736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 31984916 - 31984838
Alignment:
Q  167 ttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggatacaacagtc 245  Q
    ||||||||||||| ||||| | ||||||||| |||||| |   ||||||||||||| | | || |||||||||||||||    
T  31984916 ttaagagtatttctccaccacagatgaatcacctgatgtggatggtctcatagctagtgccctacaggatacaacagtc 31984838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 126 - 314
Target Start/End: Complemental strand, 54573020 - 54572844
Alignment:
Q  126 acttatccattattgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaata 225  Q
    ||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||| | ||             ||||  ||||||||||||||||||    
T  54573020 acttatcgattattgactgaggcgtgcacgaagcactggacttaagagtatttcaccatctcg-------------atgcagtaggtctcatagctaata 54572934  T
Q  226 ctctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaac-acttatggatgctcttgggaactta 314  Q
    | ||||| ||||||| |||| | |||||||||||| ||||||| |||| |||  |||||||||| |||  ||||||||| ||||||||||    
T  54572933 ccctccaagatacaaaagtcacatcttgctagcaccgcacgtgaattaacaaagtctcaggaactactcttggatgctcatgggaactta 54572844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 678 - 728
Target Start/End: Complemental strand, 42564172 - 42564122
Alignment:
Q  678 catatgccataccagagccaatggtttccatagcattcagtggctgcagca 728  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42564172 catatgccataccagagccaatggtttccatagcatttagtggctgcagca 42564122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 15252 - 15162
Alignment:
Q  21 attggaggaaaaattagacatagaatcattataaataataaaatcaaccataaatataagcacaattaaatatgattcttcatgaaattaaa 112  Q
    |||| |||| |||||||||||||||| |||||||||||| |||||||||| | |||||| ||||||||||||||| ||||||| || |||||    
T  15252 attgtaggagaaattagacatagaattattataaataat-aaatcaaccacagatataaacacaattaaatatgactcttcatcaagttaaa 15162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 314
Target Start/End: Complemental strand, 38787219 - 38787044
Alignment:
Q  138 ttgactgaggcgtgtacgaagcactgggcttaagagtatttcgccaccccggatgaatcatctgatgcgataggtctcatagctaatactctccaggata 237  Q
    |||||||||||||| |  | ||||||| ||||||||||||||| ||||| ||||  || ||| |||||  ||||||  |||| || ||||||||||||||    
T  38787219 ttgactgaggcgtgcaaaatgcactggacttaagagtatttcgtcaccctggattgattatccgatgcagtaggtc--atagttagtactctccaggata 38787122  T
Q  238 caacagtcgcttcttgctagcactgcacgtggattagcaagatctcaggaa-cacttatggatgctcttgggaactta 314  Q
    |||||||| | |||||||||||| ||| ||| |||| |||  |||||| || ||||| | |||||||| || ||||||    
T  38787121 caacagtcacatcttgctagcaccgcatgtgaattaacaaagtctcagaaaccacttttagatgctctgggaaactta 38787044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 4648282 - 4648350
Alignment:
Q  210 ggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcactgcacgtggattagcaag 278  Q
    ||||||||||||| |||||| ||||||||||||||| |||||||||| |||||||| || |||||||||    
T  4648282 ggtctcatagctagtactcttcaggatacaacagtcacttcttgctaacactgcacatgaattagcaag 4648350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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