View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4909-Insertion-3 (Length: 607)
Name: NF4909-Insertion-3
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4909-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 72 - 332
Target Start/End: Complemental strand, 3425407 - 3425147
Alignment:
| Q |
72 |
tttaattttccatcattcactactctctccgcttctttttggtctttctatattttgcgttggttttgcttttgcctttaaagatatttgctgaagaaat |
171 |
Q |
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| T |
3425407 |
tttaatcttccatcattcactactctctctgcttctttttggtctttctatattttgcgttggttttgcttttgcctttaaagatatttgctgaagaaat |
3425308 |
T |
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| Q |
172 |
gagtgcagaatttaactgtttaaggttataggagctggatttttgggagtttttctctcactctaacgactagccaatgcatcttcttgaatgtgctcga |
271 |
Q |
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| T |
3425307 |
gagtgcagaatttaactgtttaaggttataggagctggatttttgggagttttcctctcactctaacgactagccaatgcatcttcttgaatgtgctcga |
3425208 |
T |
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| Q |
272 |
attttttgcttgtattaaaaagcataactgattttttattagaaaatagtgtatttattaa |
332 |
Q |
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| T |
3425207 |
attttttgcttgtattaaaaagcataactgattttttattagaaaatagtgtatttattaa |
3425147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 330 - 485
Target Start/End: Complemental strand, 3425001 - 3424855
Alignment:
| Q |
330 |
taagtaatactcttaatgcacttgttaccatgatccataaaattaataacttttgtatgcatgctagctgaattaaagatttaaatannnnnnnnaggga |
429 |
Q |
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| T |
3425001 |
taagtaatactcttaatgcacttgttaccatgatccataaaattaataacttttgtatgcatgctagctgaattaaagatttaaatattttttttag--- |
3424905 |
T |
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| Q |
430 |
tgtttggatgttgtttataattcttattaattttttattcaattttaaatccttac |
485 |
Q |
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| T |
3424904 |
-----ggatgttgtttataattcttattaa-tttttattcaattttaaatccttac |
3424855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 3425509 - 3425447
Alignment:
| Q |
8 |
ccaagtccattgacagatagttggattatctacagatgttagcaaaatctcttgaattaatct |
70 |
Q |
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| T |
3425509 |
ccaagtccattgacagatagttggattatctacagatgttagcaaaatctcttgaattaatct |
3425447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 553 - 607
Target Start/End: Complemental strand, 3424775 - 3424721
Alignment:
| Q |
553 |
tacaaactataatgagttaaataatttatttaggtataaatgaaaactacagtaa |
607 |
Q |
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| T |
3424775 |
tacaaactataatgagttaaataatttatttagggataaatgaaaactacagtaa |
3424721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 3428721 - 3428661
Alignment:
| Q |
253 |
tcttcttgaatgtgctcgaattttttgcttgtattaaaaagcataact-gattttttatta |
312 |
Q |
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| T |
3428721 |
tcttcttgaatgtgctctaatttttcgcttgtctcgaaaagcataactagattttttatta |
3428661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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