View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4909-Insertion-4 (Length: 517)
Name: NF4909-Insertion-4
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4909-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 16982472 - 16982395
Alignment:
| Q |
6 |
catgatcaactcaattgcaggttttgtttggctcttggactttacatttcatagttggttatcattattactacacaa |
83 |
Q |
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| T |
16982472 |
catgatcaactcaattgcaggttttgtttggctcttggactttacatttcatagttgattatcattattactacacaa |
16982395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 445 - 517
Target Start/End: Complemental strand, 16981984 - 16981912
Alignment:
| Q |
445 |
gttaaatcaaattaaaggaaatcttacatggtcacaactattcaatgacaatatttatgcatacatacatata |
517 |
Q |
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| T |
16981984 |
gttaaatcaaattaaaggaaatcttacatggtcaaaactattcaatgacaatatttatgcatacatacatata |
16981912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 16982117 - 16982051
Alignment:
| Q |
312 |
aagaacaatcttgtcagtatttgtttgtcttgtagagggacttggttattaataaattttgtcattt |
378 |
Q |
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| T |
16982117 |
aagaacaatcttgtcggtatttgtttgtcttatagagggacttggttattaataaattttgtcattt |
16982051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 16982390 - 16982350
Alignment:
| Q |
114 |
gtgggagaggaaattattaattcaagctctatatatattca |
154 |
Q |
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| T |
16982390 |
gtgggagaggaaattattaattcaagctgtatatatattca |
16982350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 18733009 - 18732975
Alignment:
| Q |
338 |
gtcttgtagagggacttggttattaataaattttg |
372 |
Q |
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| T |
18733009 |
gtcttgtacagggacttggttattaataaattttg |
18732975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 2040910 - 2040870
Alignment:
| Q |
332 |
ttgtttgtcttgtagagggacttggttattaataaattttg |
372 |
Q |
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| T |
2040910 |
ttgtttgtcttgtgcagggatttggttattaataaattttg |
2040870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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