View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4909-Insertion-6 (Length: 346)
Name: NF4909-Insertion-6
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4909-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 6260864 - 6261180
Alignment:
| Q |
11 |
tagctaccgttgctgtaaagttttgcaagcaatgcttgctgtaaattcaaccaagcgaaaatgtggttacaaaagggatttccaccaaaatgccagaatg |
110 |
Q |
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||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||| |
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| T |
6260864 |
tagctactgttgctgtca-gttttgcagacaatgcttgctgtaaattcaaccaagccaaaatgtggttacataagggatttccaccaaattgccaaaatg |
6260962 |
T |
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| Q |
111 |
attcagcatacacatactcacttggattcccaccaacatctttatgtattgcaaaatgtgttgcaaaaactaaccaagtctgttcagcttctcaacatta |
210 |
Q |
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| T |
6260963 |
gatcagcatgcacatactcacttggatttccaccaacatctttatgtatagc-aattgtgttacaaaaaataaccaagtctgttcagcttctcaacatta |
6261061 |
T |
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| Q |
211 |
cagatctctcagaatagagaaaagatggcttccatggaatgggttgcacccatcattggtgtgccgcaggggttccagatagttggaatgagattttgta |
310 |
Q |
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| T |
6261062 |
c----------------agaaaagatggcttccatggcatggattgcacccatcattggtgtgccgcaggggttccagatagttggaatgacattttgta |
6261145 |
T |
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| Q |
311 |
tgcgtcaatcatgagttggaattaattgatcacca |
345 |
Q |
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| T |
6261146 |
tgcgtcaatcatgagctggaattaattgatcacca |
6261180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 6270402 - 6270621
Alignment:
| Q |
29 |
agttttgcaagcaatgcttgctgtaaattcaaccaagcgaaaatgtggttacaaaagggatttccaccaaaatgccagaatgattcagcatacacatact |
128 |
Q |
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| T |
6270402 |
agttttgcagacaatgcttgctgtaaattcaaccaagccaaagtctggttacataagggatttcaaccaaaatgcgaaaatggatcagcatacacatact |
6270501 |
T |
|
| Q |
129 |
cacttggattcccaccaacatctttatgtattgcaaaatgtgttgcaaaaactaaccaagtctgttcagcttctcaacattacagatctctcagaataga |
228 |
Q |
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| T |
6270502 |
cacttggatttccaccaacatctttatgtattgcaaaatgtgttacaaaatataaccaagtttgttcagcttctcaacattacagatctcttagaataga |
6270601 |
T |
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| Q |
229 |
gaaaagatggcttccatgga |
248 |
Q |
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|||||||||||||||||||| |
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| T |
6270602 |
gaaaagatggcttccatgga |
6270621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 6163059 - 6163174
Alignment:
| Q |
122 |
acatactcacttggattcccaccaacatctttatgtattgcaaaatgtgttgcaaaaactaaccaagtctgttcagcttctcaacattacagatctctca |
221 |
Q |
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|||| |||||||||||| |||||| |||| | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
6163059 |
acatcctcacttggattgccaccagcatcat-atgtattgcaaaatgtgttgcaaaaaataaccaagcctgttcagcttctcaacattacagctctatca |
6163157 |
T |
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| Q |
222 |
gaatagagaaaagatgg |
238 |
Q |
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|||| |||||||||||| |
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| T |
6163158 |
gaattgagaaaagatgg |
6163174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 6137977 - 6138087
Alignment:
| Q |
127 |
ctcacttggattcccaccaacatctttatgtattgcaaaatgtgttgcaaaaactaaccaagtctgttcagcttctcaacattacagatctctcagaata |
226 |
Q |
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|||||||||||| |||||| |||| | |||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| | | ||||||| |
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| T |
6137977 |
ctcacttggattgccaccagcatcat-atgtattgcaaaatgtgttgcagaaaataaccaaacctgttcagcttctcaacattacagctttatcagaatt |
6138075 |
T |
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| Q |
227 |
gagaaaagatgg |
238 |
Q |
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|||||||||||| |
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| T |
6138076 |
gagaaaagatgg |
6138087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 13284437 - 13284327
Alignment:
| Q |
127 |
ctcacttggattcccaccaacatctttatgtattgcaaaatgtgttgcaaaaactaaccaagtctgttcagcttctcaacattacagatctctcagaata |
226 |
Q |
| |
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|||||||||||| |||||| |||| | |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| | | ||||||| |
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| T |
13284437 |
ctcacttggattgccaccagcatcat-atgtattgcaaaatgtgttgcaaaaaataacaaaacctgttcagcttctcaacattacagctttatcagaatt |
13284339 |
T |
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| Q |
227 |
gagaaaagatgg |
238 |
Q |
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| T |
13284338 |
gagaaaagatgg |
13284327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 6135280 - 6135365
Alignment:
| Q |
153 |
tatgtattgcaaaatgtgttgcaaaaactaaccaagtctgttcagcttctcaacattacagatctctcagaatagagaaaagatgg |
238 |
Q |
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| T |
6135280 |
tatgtattgcaaaatgtgttgcaaaaaataaccaaacttgttcagcttctcaacgttacagctctatcagaattgataaaagatgg |
6135365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 6232731 - 6232823
Alignment:
| Q |
254 |
ttgcacccatcattggtg---tgccgcaggggttccagatagttggaatgagattttgtatgcgtcaatcatgagttggaattaattgatcac |
343 |
Q |
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|||||||||||||||||| || || ||||| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
6232731 |
ttgcacccatcattggtggtttgtagccggggtctcagatacctggaatgagattctgtatccgtcaatcatgagttggaattaattgatcac |
6232823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 6132193 - 6132278
Alignment:
| Q |
153 |
tatgtattgcaaaatgtgttgcaaaaactaaccaagtctgttcagcttctcaacattacagatctctcagaatagagaaaagatgg |
238 |
Q |
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||||||||||||| ||||||||||||| ||||||| | || || |||| |||||||||| ||||||||||| |||||||||||| |
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| T |
6132193 |
tatgtattgcaaagtgtgttgcaaaaagtaaccaaaccaattgagtttctgaacattacagctctctcagaattgagaaaagatgg |
6132278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 345
Target Start/End: Original strand, 6163232 - 6163298
Alignment:
| Q |
279 |
ggggttccagatagttggaatgagattttgtatgcgtcaatcatgagttggaattaattgatcacca |
345 |
Q |
| |
|
||||| ||||||| ||||||||||||| ||||||| |||||||||| || ||||||| |||| |||| |
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| T |
6163232 |
ggggtcccagatacttggaatgagattatgtatgcatcaatcatgaatttgaattaagtgattacca |
6163298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 6270620 - 6270685
Alignment:
| Q |
288 |
gatagttggaatgagattttgtatgcgtcaatcatga-------gttggaattaattgatcaccat |
346 |
Q |
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|||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |
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| T |
6270620 |
gatagttggaatgagattctgtatgggtcaatcatgactcatgggttggaattaattgatcaccat |
6270685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 6135409 - 6135486
Alignment:
| Q |
263 |
tcattggtgtgccgcaggggttccagatagttggaatgagattttgtatgcgtcaatcatgagttggaattaattgat |
340 |
Q |
| |
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|||||||||| |||||||| ||||||| ||||||||||||| | ||||| |||||||| | || ||||||| |||| |
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| T |
6135409 |
tcattggtgtatagcaggggtcccagatacttggaatgagattctctatgcatcaatcataaattagaattaagtgat |
6135486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 6138130 - 6138207
Alignment:
| Q |
263 |
tcattggtgtgccgcaggggttccagatagttggaatgagattttgtatgcgtcaatcatgagttggaattaattgat |
340 |
Q |
| |
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|||||||||| ||||| || ||||||| ||||||||||||| ||||||| ||||||| || || ||||||| |||| |
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| T |
6138130 |
tcattggtgtatagcaggagtcccagatacttggaatgagattctgtatgcatcaatcacgaattagaattaagtgat |
6138207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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