View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4909-Insertion-7 (Length: 202)

Name: NF4909-Insertion-7
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4909-Insertion-7
NF4909-Insertion-7
[»] chr4 (6 HSPs)
chr4 (8-202)||(832399-832601)
chr4 (18-74)||(10464584-10464640)
chr4 (18-59)||(10482487-10482528)
chr4 (18-74)||(10475519-10475575)
chr4 (19-74)||(8443169-8443223)
chr4 (18-52)||(10468348-10468382)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 832399 - 832601
Alignment:
Q  8 attaaaagtgagtgagtttctcttccacattttacttgtttgaatctatgt--------tacttcgtttatgttgttataataatagattgtgtgattgc 99  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||        |||||||||| ||||||||||||||||||||||||||||||    
T  832399 attaaaagtgagtgagtttctcttccacatttttcttgtttgaatctatgtatgttaattacttcgtttttgttgttataataatagattgtgtgattgc 832498  T
Q  100 tttgctgcttaattagcttctcggtattaattgttgagtaattatttattgaccattgtcttgttatttatgcttattgtaacttagataatgatatttt 199  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  832499 tttgctgcttaattagcttgtcggtattaattgttgagttattatttattgaccattttcttgttatttatgcttattgtaacttagatgatgatatttt 832598  T
Q  200 cta 202  Q
    |||    
T  832599 cta 832601  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10464584 - 10464640
Alignment:
Q  18 agtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg 74  Q
    |||||||||||||||||||| ||||||||| |||| ||| ||||||| |||||||||    
T  10464584 agtgagtttctcttccacatattacttgttagaatttatattacttcatttatgttg 10464640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 10482487 - 10482528
Alignment:
Q  18 agtgagtttctcttccacattttacttgtttgaatctatgtt 59  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  10482487 agtgagtttctcttccacatattacttgtttgaatttatgtt 10482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 10475519 - 10475575
Alignment:
Q  18 agtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg 74  Q
    |||||||||||||||||||| |||||||||||||| ||| ||| ||| | |||||||    
T  10475519 agtgagtttctcttccacatattacttgtttgaatttatattatttcatgtatgttg 10475575  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 8443223 - 8443169
Alignment:
Q  19 gtgagtttctcttccacattttacttgtttgaatctatgttacttcgtttatgttg 74  Q
    |||||||||| |||||||||| |||||||||||| | ||||||||||| |||||||    
T  8443223 gtgagtttctattccacattt-acttgtttgaatttttgttacttcgtgtatgttg 8443169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 10468348 - 10468382
Alignment:
Q  18 agtgagtttctcttccacattttacttgtttgaat 52  Q
    |||||||||||||||||||| ||||||||||||||    
T  10468348 agtgagtttctcttccacatattacttgtttgaat 10468382  T

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