View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4909_low_1 (Length: 649)
Name: NF4909_low_1
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4909_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 13 - 631
Target Start/End: Original strand, 39526583 - 39527201
Alignment:
| Q |
13 |
aatatcatcatgaacctatacatttaccttctaaatatggttttgaaataacaacttcaaggtatggcaattttggtaaaccagtacgaattttcagtat |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526583 |
aatatcatcatgaacctataaatttaccttctaaatatggttttgaaataacaacttcaaggtatggcaattttggtaaaccagtacgaattttcagtat |
39526682 |
T |
|
| Q |
113 |
tacttaatctatttattagcaaaacaatcataatcaaacacttttaacgaaattattatttaaccaattcagtttttaggcaataaaaggagagactctg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39526683 |
tacttaatctatttattagcaaaacaatcataatcaaacacttttaacgaaattattatttaaccaattcagtttttaggcaataaaaggagagacactg |
39526782 |
T |
|
| Q |
213 |
tcctacctttataatattcaaacagaacataaaccaacaaatattttcttgccaannnnnnngaaaaccaaacaagaattatagcaaacatagtatggaa |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526783 |
tcctacatttataatattcaaacagaacataaaccaacaaatattttcttgccaatttttttgaaaaccaaacaagaattatagcaaacatagtatggaa |
39526882 |
T |
|
| Q |
313 |
acatctaataaaaaccaggtgtctaatgtacaaataaaagtatttgnnnnnnnnttatgtcaagtcagcaaaccagttgatatgtaactatcaaggaaaa |
412 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526883 |
acatcgaataaaaaccaggtgtctaatgtacaaataaaagtatttgaaaaaaaattatgtcaagtcagcaaaccagttgatatgtaactatcaaggaaaa |
39526982 |
T |
|
| Q |
413 |
tgctcaatgtcctgactggttgactccctgctcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgc |
512 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526983 |
tgctcaatgtcctgactggttgactccctactcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgc |
39527082 |
T |
|
| Q |
513 |
acgtacctcctcaacccacttgttagtgttaagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgcc |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39527083 |
acgtacctcctcaacccacttgttagtgttaagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgcc |
39527182 |
T |
|
| Q |
613 |
gcatagtttgatataaaaa |
631 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
39527183 |
gcatagtttgatattaaaa |
39527201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 443 - 556
Target Start/End: Original strand, 37852879 - 37852992
Alignment:
| Q |
443 |
ctcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacgtacctcctcaacccacttgttagtgtt |
542 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| || || ||||||||||| || |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
37852879 |
ctcaccttttctcgacaagatcagttttgtttccaaccaagacaattataacatcactaccacgttcttgacgcacctcctcaacccacttgttagtgtt |
37852978 |
T |
|
| Q |
543 |
aagaaatgattgcc |
556 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37852979 |
cagaaatgattgcc |
37852992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 505
Target Start/End: Complemental strand, 4583580 - 4583521
Alignment:
| Q |
446 |
accttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctc |
505 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||| | ||| ||||| ||||||||||||| |
|
|
| T |
4583580 |
acctcttttcaacgagatcagttttgttcccaacaagaacaataatgacatcactgcctc |
4583521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University