View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4909_low_2 (Length: 450)
Name: NF4909_low_2
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4909_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 8203094 - 8202671
Alignment:
| Q |
13 |
aatataaacttatagataataaaatacagtcatattttgtttttcagaccacacttcttgcaaataaaacatcataagctagcttgctaattctctacct |
112 |
Q |
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| T |
8203094 |
aatataaacttatagataataaaatacagtcatattttgtttttcagaccacacttcttgcaaataaaacatcataagctagcttgctaattctctacct |
8202995 |
T |
|
| Q |
113 |
agatggagagtttggaaccaacttttggtttaatacgagattacaaactaattaaagcttaaataacaacttaacaagtgctagct----gcttaattaa |
208 |
Q |
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| T |
8202994 |
agatggagagtatggaaccaactttaggtttaatgtgatattacaaactaattaaagctcaaataacaacttaacaagtgctagctagctgcttaattaa |
8202895 |
T |
|
| Q |
209 |
tttacaatgtctaattcaagcaaatttaacatgacattggttccattaattcagctgctcaaccaaggcgcaaatcgtcatttttgtaaccttcttctcc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8202894 |
tttacaatgtctaattcaagcaaatttaacatgacattggttccattaattcagttgctcaaccaaggcgcaaatcgtcatttttgtaaccttcttctcc |
8202795 |
T |
|
| Q |
309 |
atggtgatgaggaagattcagatgagaatggtgctgacagaatgcatacagagtggaagcaccattggccaatgcaaccgctgattcctcgtctccttcg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8202794 |
atggtgatgaggaagattcagatgagaatggtgctgacagaatgcatacagagtggaagcaccattggccaatgcaactgctgattcctcgtctccttcg |
8202695 |
T |
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| Q |
409 |
tcgtggaaaagaaattgtggatgg |
432 |
Q |
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|||||||||||||||||||||||| |
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| T |
8202694 |
tcgtggaaaagaaattgtggatgg |
8202671 |
T |
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