View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4909_low_3 (Length: 264)

Name: NF4909_low_3
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4909_low_3
NF4909_low_3
[»] chr6 (7 HSPs)
chr6 (129-237)||(25524764-25524872)
chr6 (129-237)||(26047219-26047325)
chr6 (129-237)||(26049244-26049350)
chr6 (129-237)||(26065528-26065634)
chr6 (129-237)||(26070413-26070519)
chr6 (129-237)||(26085497-26085603)
chr6 (129-219)||(25516543-25516633)
[»] chr4 (3 HSPs)
chr4 (54-100)||(23499443-23499489)
chr4 (39-95)||(29391162-29391218)
chr4 (39-100)||(9521884-9521945)
[»] chr7 (3 HSPs)
chr7 (39-100)||(19267374-19267435)
chr7 (48-100)||(30969761-30969813)
chr7 (39-100)||(38603007-38603068)
[»] chr8 (1 HSPs)
chr8 (54-100)||(39421528-39421574)
[»] chr2 (1 HSPs)
chr2 (39-102)||(35112498-35112560)
[»] chr1 (1 HSPs)
chr1 (48-100)||(3279409-3279461)


Alignment Details
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 25524764 - 25524872
Alignment:
Q  129 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 228  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||| || ||||||||| |||||||||||| ||||||||    
T  25524764 ctgctatttttccctctcctgatttcttccttcccctctcatgtctcacatatcgtctccctccacctctttttctgtctgtgattgttcgcataacaat 25524863  T
Q  229 gcaataaaa 237  Q
    |||| ||||    
T  25524864 gcaacaaaa 25524872  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 26047219 - 26047325
Alignment:
Q  129 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 228  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26047219 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26047316  T
Q  229 gcaataaaa 237  Q
    |||| ||||    
T  26047317 gcaacaaaa 26047325  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 26049244 - 26049350
Alignment:
Q  129 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 228  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26049244 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26049341  T
Q  229 gcaataaaa 237  Q
    |||| ||||    
T  26049342 gcaacaaaa 26049350  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 26065528 - 26065634
Alignment:
Q  129 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 228  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26065528 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26065625  T
Q  229 gcaataaaa 237  Q
    |||| ||||    
T  26065626 gcaacaaaa 26065634  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 26070413 - 26070519
Alignment:
Q  129 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 228  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26070413 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26070510  T
Q  229 gcaataaaa 237  Q
    |||| ||||    
T  26070511 gcaacaaaa 26070519  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 26085497 - 26085603
Alignment:
Q  129 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcgtataacaat 228  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||||||  | |||||||||| ||||||||    
T  26085497 ctgctatttttccctctcctgatttctcccttcccctctcatgtctcacatataatcttcctccatctctttttctg--tctgattgttcgcataacaat 26085594  T
Q  229 gcaataaaa 237  Q
    |||| ||||    
T  26085595 gcaacaaaa 26085603  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 25516543 - 25516633
Alignment:
Q  129 ctgctatttttccctctcctgaattctcccttcccctctaatgtctcacatatcatctccgtccatctatttttctgtttgtgattgttcg 219  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||||||| ||||||| ||||||||| | ||||||||||    
T  25516543 ctgctatttttccctttcctgatttctcccttccactctcatgtctcacttatcatctccctccatctctttttctgtctttgattgttcg 25516633  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 23499489 - 23499443
Alignment:
Q  54 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  23499489 gtaaagtgagaaaattaagggttgttattttaacaaactcatgattt 23499443  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 29391162 - 29391218
Alignment:
Q  39 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcat 95  Q
    |||| ||||||||| ||||||| |||||| | |||||||||||| ||||||||||||    
T  29391162 taaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat 29391218  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 9521945 - 9521884
Alignment:
Q  39 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 100  Q
    |||| ||| ||||| ||||||||||||||  || |||||| | |||||||||||||||||||    
T  9521945 taaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgattt 9521884  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 19267435 - 19267374
Alignment:
Q  39 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 100  Q
    |||| ||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  19267435 taaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgattt 19267374  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 30969761 - 30969813
Alignment:
Q  48 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 100  Q
    ||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  30969761 taaagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgattt 30969813  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 38603007 - 38603068
Alignment:
Q  39 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 100  Q
    |||| ||||| ||| ||||||  ||||||  |||||||||||||||||||||||||||||||    
T  38603007 taaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgattt 38603068  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 39421528 - 39421574
Alignment:
Q  54 gtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 100  Q
    ||||||||||||||  || ||||||||||||||||||||||||||||    
T  39421528 gtaaagtgagaaaatcaaaggttgttattttaacaaactcatgattt 39421574  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 35112498 - 35112560
Alignment:
Q  39 taaattgagtaaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattttt 102  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||    
T  35112498 taaattggttaaagtgtaaagtgagaaaa-taagggttgttattataacaagctcataattttt 35112560  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 3279409 - 3279461
Alignment:
Q  48 taaagggtaaagtgagaaaactaagggttgttattttaacaaactcatgattt 100  Q
    ||||| ||||||||||||||  |||||||||| ||| |||||||| |||||||    
T  3279409 taaagtgtaaagtgagaaaatgaagggttgttttttaaacaaacttatgattt 3279461  T

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