View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4909_low_4 (Length: 261)
Name: NF4909_low_4
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4909_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 44653578 - 44653811
Alignment:
| Q |
23 |
atatttttggagtatatgcaagatggtattgaaaagttgcaaattattttgggagtcccatgagccaaacatgagctctactaaattagtgtaactaatg |
122 |
Q |
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| T |
44653578 |
atatttttggagtatatgcaagatggtattgaaaagttgcaaattattttgggagtcccatgagccaaacatgagctctactaaattagtgtaactaatg |
44653677 |
T |
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| Q |
123 |
tcataaccgaatgaacataaactccaaaatgaacttaaacggcatgttttcaacaacaacaaaaaatgtttccta-------------tataagtatata |
209 |
Q |
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| T |
44653678 |
tcataaccgaatgaacataaactccaaaatgaacttaaatggcatgttttcaacaacaacaaaaaatgtttcctataccctccacctctataagtatata |
44653777 |
T |
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| Q |
210 |
atccgatgcatgtttgtttattaacaggtaatat |
243 |
Q |
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| T |
44653778 |
atccgatgcatgtttgtttattaacaggtaatat |
44653811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 175
Target Start/End: Complemental strand, 44651783 - 44651663
Alignment:
| Q |
57 |
agttgcaaattattttgggagtcccatgagccaaacatgagctctactaaa--ttagtgtaactaatgtcataaccgaatgaacataaactccaaaatga |
154 |
Q |
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| T |
44651783 |
agttgcagattattttgggtgttccatgagccaaacataagttctactaaaattaattgtaactaatgccataaactaaggaacatgaactccaaaatgt |
44651684 |
T |
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| Q |
155 |
acttaaacggcatgttttcaa |
175 |
Q |
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| T |
44651683 |
agttaaacgccaagttttcaa |
44651663 |
T |
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