View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4909_low_6 (Length: 243)
Name: NF4909_low_6
Description: NF4909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4909_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 39029842 - 39030092
Alignment:
| Q |
1 |
actaaagtatgcaaactattaagatacaaatcatgaattggaagatattgttttcgaaatgtgaatcgagtcttaggtttgtacaaatttgaccaaaaag |
100 |
Q |
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| T |
39029842 |
actaatgtatgcaaactattaagattcaaatcatgaattggaagatattgttttcgaaatgtgaatcgagtcttaggtttgtacaaatttgaccaaaaag |
39029941 |
T |
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| Q |
101 |
tggttgaatacattaagtttagtaatggttcattagaatgaatcaaggttcatcatgttcatcataataaattgaaattcaatattcaaacagata---- |
196 |
Q |
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| T |
39029942 |
tggttgactacattaagtttagtaatgattcattagaatgaatcaaggttcatcatgttcatcataataaattgagattcaatattcaaacagatacata |
39030041 |
T |
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| Q |
197 |
---------catattgattgtgttgggtttctggtaggagtgatgatgtcc |
238 |
Q |
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| T |
39030042 |
ttagataatcatattgattgtgttgggtttctggtaggagtgatgaagtcc |
39030092 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 30284527 - 30284589
Alignment:
| Q |
95 |
aaaaagtggttgaatacattaagtttag-taatggttcattagaatgaatcaaggttcatcat |
156 |
Q |
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| T |
30284527 |
aaaaagtggttgactacactaagtttagataatgattcattacaatgaatcatgattcatcat |
30284589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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