View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_high_13 (Length: 393)
Name: NF4910_high_13
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 4274797 - 4274977
Alignment:
| Q |
11 |
atcatcaacattgacaaaattcatgaatattaaatcattgtaagaaagaaagaaaacctcggggtgataacgaattcctcctttcataggaccacgtgca |
110 |
Q |
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| T |
4274797 |
atcataaacattgacaaaattcatgaatattaaatcattgtaagaaagaaagaaaacctcggggtgataacgaattcctcctttcataggaccacgtgca |
4274896 |
T |
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| Q |
111 |
ttgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatcttttgggatcgtacattcgacctacaatgat |
191 |
Q |
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| T |
4274897 |
ttgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatcttttgggatcgtacattcgacctacaatgat |
4274977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 280 - 378
Target Start/End: Original strand, 4275066 - 4275164
Alignment:
| Q |
280 |
cttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggcaacaag |
378 |
Q |
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| T |
4275066 |
cttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggcaacaag |
4275164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 38823327 - 38823203
Alignment:
| Q |
63 |
aaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatctt |
162 |
Q |
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| T |
38823327 |
aaaacctcagggtgataacgaattcctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatctt |
38823228 |
T |
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| Q |
163 |
ttgggatcgtacattcgacctacaa |
187 |
Q |
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| T |
38823227 |
tgggaatagtacattcaacctacaa |
38823203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 41209785 - 41209661
Alignment:
| Q |
63 |
aaaacctcggggtgataacgaattcctcctttcataggaccacgtgcattgtcatgttggatccgaaaaccgacgtatgaaaccaaacttccatcatctt |
162 |
Q |
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| T |
41209785 |
aaaacctcagggtgataacgaattcctcctttcattggaccacgagcattgtcatgttggatcctaaacccaacataagaaaccaaagttccatcatctt |
41209686 |
T |
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| Q |
163 |
ttgggatcgtacattcgacctacaa |
187 |
Q |
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| || || |||||||| |||||||| |
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| T |
41209685 |
tgggaattgtacattcaacctacaa |
41209661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 41209483 - 41209392
Alignment:
| Q |
281 |
ttgatttctctgtaaggaatgagaaggcttttctcaagtttggaatccaaaccaaggattcgagatgcacgttggaaattacggttggtggc |
372 |
Q |
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| T |
41209483 |
ttgatttctctaaatggaatgagaagactcttctcaagcttggaatctaaaccaaggatacgagatgcacgttgaaaattacggtttgtggc |
41209392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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