View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_high_14 (Length: 381)
Name: NF4910_high_14
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 54348196 - 54347844
Alignment:
| Q |
16 |
gaagaagatggagccggcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccagcgaggcaggaacctattaaggagaaaaggttgatg |
115 |
Q |
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| T |
54348196 |
gaagaagatggagccagcaaggacgatggtgtaacggcgaccaatccagtcagaggttcggccggcgaggcaggaacctattaaggagaaaaggttgatg |
54348097 |
T |
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| Q |
116 |
atgcctactaggatttcaatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaa |
215 |
Q |
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| T |
54348096 |
atgcctactaggatttcaatttggacattagatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatctgcataacataaaa |
54347997 |
T |
|
| Q |
216 |
taacatacatatagttagttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattata---- |
311 |
Q |
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| T |
54347996 |
taacatacatatagttagttaatgtccatacatttccatgcatgtttactatctagctatgtatcaatatgtatggaggtaaatatatacattatatatg |
54347897 |
T |
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| Q |
312 |
tagtcactacttaccataaccaagtaaaatggaagtcatggaagccaatatag |
364 |
Q |
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| T |
54347896 |
tagtcactacttaccataaccaagtaaaatggaagtcatggaagccaatatag |
54347844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 26152338 - 26152296
Alignment:
| Q |
322 |
ttaccataaccaagtaaaatggaagtcatggaagccaatatag |
364 |
Q |
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| T |
26152338 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatag |
26152296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 26152478 - 26152436
Alignment:
| Q |
322 |
ttaccataaccaagtaaaatggaagtcatggaagccaatatag |
364 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
26152478 |
ttaccatatccaagcaaaatggaagtcatggaagccaacatag |
26152436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 26152768 - 26152712
Alignment:
| Q |
146 |
gatagtttgaggtctctttttatgtatatcactgctccactcatcaccccaatatct |
202 |
Q |
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|||| ||| ||||||||||||||||| || ||||||||||||| || ||||||||| |
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| T |
26152768 |
gatactttaaggtctctttttatgtagattgctgctccactcataacaccaatatct |
26152712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 27318815 - 27318767
Alignment:
| Q |
155 |
aggtctctttttatgtatatcactgctccactcatcaccccaatatctg |
203 |
Q |
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| T |
27318815 |
aggtctctttttatatagatggctgctccactcatcacaccaatatctg |
27318767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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