View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4910_high_18 (Length: 339)

Name: NF4910_high_18
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4910_high_18
NF4910_high_18
[»] chr1 (1 HSPs)
chr1 (13-321)||(42623425-42623733)


Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 42623425 - 42623733
Alignment:
Q  13 agcagagaagaagtcggggcatggtaattcgtctttagaggcgccgcgacaaatggcagcccaagtagtttggaagagactgccggaacaaccgtcgagg 112  Q
    |||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42623425 agcagaaaagaagtcggggcatggtaattcatctttagaggtgccgcgacaaatggcagcccaaatagtttggaagagactgccggaacaaccgtcgagg 42623524  T
Q  113 agggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagtgca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42623525 agggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagtgca 42623624  T
Q  213 tcttattaggctcacatggaagcaatttattaagaaactctagcttaggtggtgtgagaaattcaaccatggtttgatttaccttggcttccaagtaaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42623625 tcttattaggctcacatggaagcaatttattaagaaactctagcttaggtggtgtgagaaattcaaccatggtttgatttaccttggcttccaagtaaat 42623724  T
Q  313 agcaccttc 321  Q
    |||||||||    
T  42623725 agcaccttc 42623733  T

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