View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_high_20 (Length: 330)
Name: NF4910_high_20
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 317
Target Start/End: Complemental strand, 26801898 - 26801584
Alignment:
| Q |
4 |
agacatgattaagagagggtttagatatgttggtccaacagtggttcattcatttatgcaggcagctggcctaacaaatgaccacttaatcacttgccac |
103 |
Q |
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| T |
26801898 |
agacatgattaagagagggtttagatatgttggtccaacagtggttcattcatttatgcaggcagctggcctaacaaatgaccacttaatcacttgccac |
26801799 |
T |
|
| Q |
104 |
aggcacttgcaatgcacattattggcagccatataagagattaattgaccctacaagttctcaagacataaattgaaagttattattatgtatgcttaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26801798 |
aggcacttgcaatgcacattattggcagccatataagagattaattgaccctacaagttctcaagacataaattgaaagttattattatgtatgcttaaa |
26801699 |
T |
|
| Q |
204 |
agcatatgtaatataactaatgtgctgactatagtttacttggagttcattgttgtgtatattattagataggtctgaaagtt-ttttctctctttctga |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26801698 |
agcatatgtaatataactaatgtgctgactatagtttacttggagttcattgttgtgtatattattagataggtctgaaagtttttttctctctttctga |
26801599 |
T |
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| Q |
303 |
tttgtgagatgttgt |
317 |
Q |
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||||||||||||||| |
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| T |
26801598 |
tttgtgagatgttgt |
26801584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 18415627 - 18415504
Alignment:
| Q |
4 |
agacatgattaagagagggtttagatatgttggtccaacagtggttcattcatttatgcaggcagctggcctaacaaatgaccacttaatcacttgccac |
103 |
Q |
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||||||||| | ||||| ||||| | ||| || || |||||||| ||||| |||||||| |||||||| || || |||||||||||||||||||||||| |
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| T |
18415627 |
agacatgatcagaagaggttttaggtttgtaggccccacagtggtacattcgtttatgcaagcagctggtctcaccaatgaccacttaatcacttgccac |
18415528 |
T |
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| Q |
104 |
aggcacttgcaatgcacattattg |
127 |
Q |
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|| |||||| |||||||||||||| |
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| T |
18415527 |
agccacttgaaatgcacattattg |
18415504 |
T |
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