View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_high_23 (Length: 318)
Name: NF4910_high_23
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 37604424 - 37604734
Alignment:
| Q |
1 |
attctcataattggtctcacagcaggggcagtagtccgaagaaggaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaa |
100 |
Q |
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| T |
37604424 |
attctcataattggtctcacagaaggggcagtagtccgaagaagggacccccc-ttccttgaagtcttatatatgcgaagggagaacacccctcaacaac |
37604522 |
T |
|
| Q |
101 |
ctccatnnnnnnnctttgatccgttgaggtatgtgcagattccacattctcatccaatctcccggcattctatactccacattatcaatgagagtttcca |
200 |
Q |
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| T |
37604523 |
ctccataaaaaaactttgatccgttgaggtatgtgcagattccacattctcgtccaatctcccggcattctatactccacattatgaatgagagtttcca |
37604622 |
T |
|
| Q |
201 |
tatcatacatgtatgcagacttcactgtataatgccctttgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttgcg |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604623 |
tatcatacatgtatgcagacttcgctgtataatgccctttgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttgcg |
37604722 |
T |
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| Q |
301 |
gatttcttctct |
312 |
Q |
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|||||||||||| |
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| T |
37604723 |
gatttcttctct |
37604734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 173
Target Start/End: Original strand, 8178921 - 8178980
Alignment:
| Q |
114 |
ctttgatccgttgaggtatgtgcagattccacattctcatccaatctcccggcattctat |
173 |
Q |
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||||||||| ||||||||| || ||||||||||||||||||||||| |||| || ||||| |
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| T |
8178921 |
ctttgatcctttgaggtatatgaagattccacattctcatccaatcacccgacactctat |
8178980 |
T |
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