View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4910_high_29 (Length: 293)

Name: NF4910_high_29
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4910_high_29
NF4910_high_29
[»] chr1 (4 HSPs)
chr1 (13-277)||(48475779-48476044)
chr1 (103-255)||(34588178-34588333)
chr1 (103-184)||(17304481-17304562)
chr1 (207-255)||(34588384-34588432)
[»] chr7 (1 HSPs)
chr7 (31-255)||(27857126-27857344)
[»] chr4 (5 HSPs)
chr4 (103-278)||(48813519-48813697)
chr4 (103-278)||(47997230-47997408)
chr4 (190-268)||(12389791-12389869)
chr4 (207-278)||(40142786-40142857)
chr4 (110-251)||(16047491-16047639)
[»] chr6 (1 HSPs)
chr6 (103-278)||(29092120-29092298)
[»] chr3 (4 HSPs)
chr3 (103-255)||(5937499-5937654)
chr3 (103-255)||(13857793-13857948)
chr3 (103-278)||(5931758-5931936)
chr3 (207-255)||(13857694-13857742)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 48475779 - 48476044
Alignment:
Q  13 aatattcatatagacaaggatcaactaggacttcaaggttaaagttatttgccacttgttgaaagaaagaagatgtctgctatttcattttaaatattta 112  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48475779 aatattcatatagacaaggatcaactagaacttcaaggttaaagttattagccacttgttgaaagaaagaagatgtctgctatttcattttaaatattta 48475878  T
Q  113 gctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatgtgctgagagtaactaaataatgattgta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48475879 gctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatgtgctgagagtaactaaataatgattgta 48475978  T
Q  213 catctttatactttaaactgaagttcattttattgttacttaaa-cagtaagctcttgtgacttat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48475979 catctttatactttaaactgaagttcattttattgttacttaaagcagtaagctcttgtgacttat 48476044  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 255
Target Start/End: Original strand, 34588178 - 34588333
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  || |||||||||    
T  34588178 taaacatttagctttattttgttttgttattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgtgagtaacta 34588277  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgttacttaa 255  Q
    |  ||| ||||| ||||||||| ||| ||| ||||||| |||||||||||||||||    
T  34588278 aggaattattgtgcatctttatgcttcaaaatgaagttgattttattgttacttaa 34588333  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 17304481 - 17304562
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg 184  Q
    |||| ||||||||||||||||| ||   ||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||    
T  17304481 taaacatttagctttattttgtcttgttattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatg 17304562  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 34588384 - 34588432
Alignment:
Q  207 attgtacatctttatactttaaactgaagttcattttattgttacttaa 255  Q
    ||||| ||||||||| ||| ||||||||||| |||||||||||||||||    
T  34588384 attgtgcatctttatgcttcaaactgaagttgattttattgttacttaa 34588432  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 255
Target Start/End: Complemental strand, 27857344 - 27857126
Alignment:
Q  31 gatcaactaggacttcaaggttaaagttatttgccacttgttgaaagaaagaagatgtctgctatttcattttaaatatttagctttattttgtgttacc 130  Q
    |||||| | ||||||||| ||| |||||||| || ||||||||| ||||    |||||||||||||      |||| ||||||||||||||||| || ||    
T  27857344 gatcaatttggacttcaaagttgaagttattagctacttgttgagagaa----gatgtctgctatta-----taaacatttagctttattttgttttgcc 27857254  T
Q  131 attataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaactaaataatgattgtacatctttatacttta 227  Q
    ||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  |||||||||||||  ||| ||||| ||||||||||||| |    
T  27857253 attgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatctattgagagtaactaaggaattattgtgcatctttatacttca 27857154  T
Q  228 aactgaagttcattttattgttacttaa 255  Q
    |||||||||| |||||||||||||||||    
T  27857153 aactgaagttgattttattgttacttaa 27857126  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 278
Target Start/End: Original strand, 48813519 - 48813697
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || | ||| ||||| ||||| |||||||||| ||||  ||||| |||||||||||||||   |  ||||||||| ||    
T  48813519 taaacatttagctttattttgttttgctattgtaatagttttatttggaaggatgttgaccctatttacttatgcaagtatgatgtattgagagtaagta 48813618  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatg 278  Q
    |  ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||  | ||||||||||||| |||||    
T  48813619 aggaatgattgtgcatctttatacttcaaactgaagttgattttattgttacttaaggattaagctcttgtgaattatg 48813697  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 47997408 - 47997230
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||| ||||||||||| |  ||||| ||||| ||||| ||| |||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  47997408 taaacatttaactttattttgtttagccattgtaatagttttatttgaaaggatgttgaccctattaacttatgcaagtatgatgtattgagagtaacta 47997309  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatg 278  Q
    |  ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||  | ||| ||||||||| |||||    
T  47997308 aggaatgattgtgcatctttatacttcaaactgaagttgattttattgttacttaaggattaaactcttgtgaattatg 47997230  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 12389869 - 12389791
Alignment:
Q  190 agagtaactaaataatgattgtacatctttatactttaaactgaagttcattttattgttacttaaacagtaagctctt 268  Q
    |||||||||||  ||| ||||| ||||||||||||| ||||||||||| |||||||||||||||||  | |||||||||    
T  12389869 agagtaactaaggaattattgtgcatctttatacttcaaactgaagttgattttattgttacttaaggattaagctctt 12389791  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 40142786 - 40142857
Alignment:
Q  207 attgtacatctttatactttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatg 278  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||||||||  | ||||||||| ||| |||||    
T  40142786 attgtgcatctttatacttcaaactgaagttgattttattgttacttaaggattaagctcttatgatttatg 40142857  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 16047491 - 16047639
Alignment:
Q  110 ttagctttattttgtgttaccattataataattttacttggaagg-atcttgatactattaacttatgcaagtatg---tgctgagagtaactaaataat 205  Q
    ||||||| ||||||| || ||||| ||||| ||||  |||||||| || ||||  |||||||||||||||||||||   |  || ||||||||||  |||    
T  16047491 ttagcttgattttgttttgccattgtaatagttttctttggaagggatgttgacgctattaacttatgcaagtatgatgtattgtgagtaactaagaaat 16047590  T
Q  206 gattgtacatctt---tatactttaaactgaagttcattttattgttac 251  Q
     ||||| | ||||   ||||||| ||||||||||| |||||||||||||    
T  16047591 tattgtgcctcttctttatacttcaaactgaagttgattttattgttac 16047639  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 278
Target Start/End: Original strand, 29092120 - 29092298
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || ||||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  29092120 taaacatttagctttattttgttttgccattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgagagtaacta 29092219  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatg 278  Q
    |  ||  ||||| ||||||||||||| ||||||||||| |||||||||||||||||  | ||||||||| ||| |||||    
T  29092220 aggaactattgtgcatctttatacttcaaactgaagttgattttattgttacttaaggattaagctcttatgatttatg 29092298  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 103 - 255
Target Start/End: Original strand, 5937499 - 5937654
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || ||||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  5937499 taaacatttagctttattttgttttgccattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgagagtaacta 5937598  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgttacttaa 255  Q
    |  ||| ||||| ||| ||||| ||| ||||||||||| |||||||||||||||||    
T  5937599 aggaattattgtgcatttttatgcttcaaactgaagttgattttattgttacttaa 5937654  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 13857948 - 13857793
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| ||  |||| ||||| ||||  |||||||||| ||||  |||||||||||||||||||||   |  ||||||||||||    
T  13857948 taaacatttagctttattttgttttgtcattgtaatagttttctttggaaggatgttgactctattaacttatgcaagtatgatgtattgagagtaacta 13857849  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgttacttaa 255  Q
    |  ||| ||||| ||||||||| ||| ||||||||||| |||||||||||||||||    
T  13857848 aggaattattgtgcatctttatgcttcaaactgaagttgattttattgttacttaa 13857793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 5931936 - 5931758
Alignment:
Q  103 taaatatttagctttattttgtgttaccattataataattttacttggaaggatcttgatactattaacttatgcaagtatg---tgctgagagtaacta 199  Q
    |||| ||||||||||||||||| || ||||| ||||| ||||  |||||||||| ||||  |||||||||||| ||||||||   |  ||||||||||||    
T  5931936 taaacatttagctttattttgttttgccattgtaatagttttctttggaaggatgttgactctattaacttatccaagtatgatgtattgagagtaacta 5931837  T
Q  200 aataatgattgtacatctttatactttaaactgaagttcattttattgttacttaaacagtaagctcttgtgacttatg 278  Q
    |  ||| ||||  ||||||||| ||| ||||||||||| |||||||||||||||||  | ||||||||| ||| |||||    
T  5931836 aggaattattgggcatctttatgcttcaaactgaagttgattttattgttacttaaggattaagctcttatgatttatg 5931758  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 13857742 - 13857694
Alignment:
Q  207 attgtacatctttatactttaaactgaagttcattttattgttacttaa 255  Q
    ||||| ||||||||| ||| ||||||||||| |||||||||||||||||    
T  13857742 attgtgcatctttatgcttcaaactgaagttgattttattgttacttaa 13857694  T

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