View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_high_34 (Length: 255)
Name: NF4910_high_34
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_high_34 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 37604242 - 37604352
Alignment:
| Q |
145 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
244 |
Q |
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| T |
37604242 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
37604341 |
T |
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| Q |
245 |
tacctgctgtt |
255 |
Q |
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| T |
37604342 |
tacctgctgtt |
37604352 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 37604190 - 37604233
Alignment:
| Q |
19 |
ctgttcgccatatttttggtgttttaggacataatttcccactgata |
65 |
Q |
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| T |
37604190 |
ctgttcgccatatttttggtgttttaggac---atttcccactgata |
37604233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 253
Target Start/End: Original strand, 8178542 - 8178738
Alignment:
| Q |
57 |
ccactgataaatagctttacgcgctaactggacaacaacaccaacattctgaacttcgccctcccaaactttatcattacggcaccttcataaacaccac |
156 |
Q |
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| T |
8178542 |
ccactgaaaaataccttcgcgcgctagctgtacagccatacgaacattctgtacctcgccttcccacactttatcattacggcggcgccatatgcaccat |
8178641 |
T |
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| Q |
157 |
aacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctg |
253 |
Q |
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| T |
8178642 |
aacaccgctgctatgtccctgcacaaatgattttgcagcctgcaaaaaacagtaaataaatgtgcagccagtcccgtggcggcatcgatacctgctg |
8178738 |
T |
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