View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_high_35 (Length: 252)
Name: NF4910_high_35
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 29341006 - 29341202
Alignment:
| Q |
11 |
cagagacaaaaaccttaaacctacactataaataatagagaccaaaaccataaacctacactataaataataattcaagggcattgaatcatata-cgca |
109 |
Q |
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| T |
29341006 |
cagagaccaaaaccttaaacctacactgtaaataatagagaccaaaaccataaaccta-actataaataataattcaagggcattgaatcatataacgca |
29341104 |
T |
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| Q |
110 |
tacattttaccctaagtcacttcctaaatccacaatgcttactaacttgagtgtttgagtgtctttacatataccacactctctttccaagaataagg |
207 |
Q |
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| T |
29341105 |
atcattttaccttaaatcacctcctacatccacaatgcttactaacttgagcatttgagtgtatttacatgtgtcaccctctctttccaagaataagg |
29341202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 29357080 - 29357213
Alignment:
| Q |
47 |
agagaccaaaaccataaacctacactataaataataattcaagggcattgaatcatatacgcatacattttaccctaagtcacttcctaaatccacaatg |
146 |
Q |
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|||||| |||||| ||||||||| ||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||| |||| ||||| |||||||||| |
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| T |
29357080 |
agagactaaaaccctaaacctaccctataaataataactcaagggcattgactcaaatacacatacattttaccctaaatcacctcctagatccacaatg |
29357179 |
T |
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| Q |
147 |
-cttactaacttgagtgtttgagtgtctttacat |
179 |
Q |
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| T |
29357180 |
ttttacaaacttgagtgtttgagtgtctttacat |
29357213 |
T |
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