View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_high_6 (Length: 474)
Name: NF4910_high_6
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 4903752 - 4904132
Alignment:
| Q |
20 |
ggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaatttt |
119 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903752 |
ggaatggtgagtttttgaacaaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaatttt |
4903851 |
T |
|
| Q |
120 |
caacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttt |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |
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| T |
4903852 |
caacaatgttgtgacagatgtggaggagctgttggaatctgttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttt |
4903951 |
T |
|
| Q |
220 |
tatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtg |
319 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903952 |
tatgagtggaattggaatctgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtg |
4904051 |
T |
|
| Q |
320 |
tttctctggcttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
400 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4904052 |
tttctctggtttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttctaagctgcttctttagga |
4904132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 1557359 - 1557474
Alignment:
| Q |
151 |
ttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtt |
250 |
Q |
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|||||||| ||||||| ||||| |||||||||| ||||||||| |||| | || ||||||||||| || |||||||||||||||||| ||||| |
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| T |
1557359 |
ttggaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgtc |
1557458 |
T |
|
| Q |
251 |
tgttgcggtgatgctg |
266 |
Q |
| |
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||||||| ||| |||| |
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| T |
1557459 |
tgttgcgttgaggctg |
1557474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 12123902 - 12123866
Alignment:
| Q |
91 |
atttggaaagcgaggaatgacagaattttcaacaatg |
127 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
12123902 |
atttggaaagctaggaatgacagaattttcaataatg |
12123866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 22153805 - 22153441
Alignment:
| Q |
20 |
ggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaatttt |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
22153805 |
ggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataatttt |
22153706 |
T |
|
| Q |
120 |
caacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttt |
219 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
22153705 |
caacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttt |
22153606 |
T |
|
| Q |
220 |
tatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtg |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||| | |
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| T |
22153605 |
tatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcg |
22153506 |
T |
|
| Q |
320 |
tttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
383 |
Q |
| |
|
||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
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|
| T |
22153505 |
tttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22153441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 22209720 - 22209356
Alignment:
| Q |
20 |
ggaatggtgagtttttgaataaaaagctgcgcaggggtggtagattaatttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaatttt |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
22209720 |
ggaatggtgagtttttgaacaaaaagctgcgctggggtggtagattaatttggcatgccgcaatttggagtatttggaaagcgaggaatgacataatttt |
22209621 |
T |
|
| Q |
120 |
caacaatgttgtgacagatgtggaggagttgttggaatctgttaaggtgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttt |
219 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
22209620 |
caacaatattgtgacagatgtggagaagctgttggaatcttttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttt |
22209521 |
T |
|
| Q |
220 |
tatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtggctgtttggtggccttctggttgttctgtagtcgtg |
319 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| || ||||| | |
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| T |
22209520 |
tatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcggctgtttggtcgccttctggttgttatgcagtcgcg |
22209421 |
T |
|
| Q |
320 |
tttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttct |
383 |
Q |
| |
|
||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||| |
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|
| T |
22209420 |
tttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttct |
22209356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 38185318 - 38185265
Alignment:
| Q |
211 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgc |
264 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
38185318 |
tgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatgc |
38185265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 261
Target Start/End: Original strand, 53562243 - 53562433
Alignment:
| Q |
67 |
atttggcatgctgcaatttggagtatttggaaagcgaggaatgacagaattttcaacaatgttgtgacagatgtggaggagttgttggaatctgttaagg |
166 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||| | || || ||||| ||||| | || |||| |
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|
| T |
53562243 |
atttggcatgctgttatttggagtatatggaaagcgaggaacgacagaattttcaataatgctgttattgaggttgaggatctgttg----cagtcaagg |
53562338 |
T |
|
| Q |
167 |
tgttgtcttggaggtggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtga |
261 |
Q |
| |
|
| ||||||||||||||| |||||| || || || | |||| |||||| || |||||||| |||||||| ||||| |||||| |||||||| |
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|
| T |
53562339 |
ttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 43073787 - 43073753
Alignment:
| Q |
161 |
ttaaggtgttgtcttggaggtggtttttgggtagg |
195 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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|
| T |
43073787 |
ttaaggtgttgtcttggaggtggttgttgggtagg |
43073753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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