View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_11 (Length: 422)
Name: NF4910_low_11
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 408
Target Start/End: Complemental strand, 298365 - 297978
Alignment:
| Q |
12 |
gagaagaacataagtagtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaaccatcaataacagagtgtacaataataccggta |
111 |
Q |
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| T |
298365 |
gagaagaacataagtagtcataatgacatgtttctgaacacaatctcatcaatatcatcttcactaactatcaataacagagtgtacaataagaccggta |
298266 |
T |
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| Q |
112 |
ctagaagtaaatcagattgnnnnnnntaaataaataaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaa |
211 |
Q |
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| T |
298265 |
ctagaagtga----gattgaaaaaaataaataaaaaaaggaatcactatagagttgcaatcaccatggagaacttctggaaccaagaaatcaaaatcaaa |
298170 |
T |
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| Q |
212 |
tattttgagaaaagttttgttatcactaaaaatattttttctattcaaatcccttaaaagacttgtattgattaaatgatcctcaagcaacttggcaagn |
311 |
Q |
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| T |
298169 |
tattttgagaaaagttttgttatcactaaaaatattttttctattcaaatcccttaaa-ga----tattgattaaatgatcctcaagcaactgggcaaga |
298075 |
T |
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| Q |
312 |
nnnnnngaattatacatatagaatatacagttaaatatgatagtcacccaccaccataatgaatgaaacaatgaattgatttttacttattattagt |
408 |
Q |
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| T |
298074 |
aaaaaagaattatacatatagaatatacagttaaatatgatagtcacccaccaccataatgaatgaaacaatgaattgatttttacttattattagt |
297978 |
T |
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