View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_15 (Length: 371)
Name: NF4910_low_15
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 3 - 351
Target Start/End: Original strand, 43261881 - 43262228
Alignment:
| Q |
3 |
cactaaaaacacacccctctgcatnnnnnnnncagtcaaactgctacagcttccatccttaccgctgcaagcactcctccggacaccacacccactcata |
102 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43261881 |
cactaaaaacacacccctctgcataaaaaaa-cagtcaaacggctacagcttccatccttaccgccgcaagcactcctccggacaccacacccactcata |
43261979 |
T |
|
| Q |
103 |
aaacatacacgtcgaggtagccaagaaaggacttgttcatatccttcattttacaccattacaacaatatcaacttcacatcagaagnnnnnnngttctg |
202 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43261980 |
aaacatacacgccgaggtagccaagataggacttgttcatatccttcattttacaccattacaacaatatcaacttcacatcagaagaaaaaaagttctg |
43262079 |
T |
|
| Q |
203 |
aaagtatgaattaatcaaactcatgcttcatgtaaaccataatcaactatcaatactattttggaggtacaggaacaatggcataaaagattaacctagt |
302 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43262080 |
aaagtatgaattaatcaaactcatacttcatgtaaaccataatcaactatcaatactattttggaggtacaggaacagtggcataaaagattaacctagt |
43262179 |
T |
|
| Q |
303 |
ctctaataataaagtcttgtaaccaaatccaaaccatatatgcatcaca |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43262180 |
ctctaataataaagtcttgtaaccaaatccaaaccatatatgcatcaca |
43262228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 36229246 - 36229190
Alignment:
| Q |
285 |
ataaaagattaacctagtctctaataataaagtcttgtaaccaaatccaaaccatat |
341 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
36229246 |
ataaaaggttaacctagtctctaataataaagtcatgtaacgaaatccaaaccatat |
36229190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 48223634 - 48223519
Alignment:
| Q |
236 |
aaaccataatcaactatcaatactattttggaggtacaggaacaatggcataaaagattaacctagtctctaataataaagtcttgtaaccaaatccaaa |
335 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| | ||| ||||||||||||||| |
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| T |
48223634 |
aaaccataatcaactatcaatactattttggaggtacaggaacagtgacataaaaagttaacctagtctctaataatatattctggtaaccaaatccaaa |
48223535 |
T |
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| Q |
336 |
ccatatatgcatcaca |
351 |
Q |
| |
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|||||||||||||||| |
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| T |
48223534 |
ccatatatgcatcaca |
48223519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 5525871 - 5525778
Alignment:
| Q |
236 |
aaaccataatcaactatcaatactattttggaggtacaggaacaatggcataaaagattaacctagtctctaataataaagtcttgtaaccaaat |
330 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| || | |||||||||||||||||||||||| |
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| T |
5525871 |
aaaccataatcaactatcaatactattttggaggtacatgaacagtgccataaaaggttaaccta-tcacaaataataaagtcttgtaaccaaat |
5525778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 134 - 241
Target Start/End: Complemental strand, 5526087 - 5525980
Alignment:
| Q |
134 |
cttgttcatatccttcattttacaccattacaacaatatcaacttcacatcagaagnnnnnnngttctgaaagtatgaattaatcaaactcatgcttcat |
233 |
Q |
| |
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||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||| ||| |||||||| |||| | |
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| T |
5526087 |
cttgttcgtattcttcattttacaccattacaacaataacaacttcacatcaaaagaaaaaaagttctaaaagtatgaatgaattaaactcatacttctt |
5525988 |
T |
|
| Q |
234 |
gtaaacca |
241 |
Q |
| |
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|| ||||| |
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|
| T |
5525987 |
gtgaacca |
5525980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 5379373 - 5379340
Alignment:
| Q |
308 |
ataataaagtcttgtaaccaaatccaaaccatat |
341 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
5379373 |
ataataaagtcttgtaaccaaattcaaaccatat |
5379340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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