View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_18 (Length: 339)
Name: NF4910_low_18
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 42623425 - 42623733
Alignment:
| Q |
13 |
agcagagaagaagtcggggcatggtaattcgtctttagaggcgccgcgacaaatggcagcccaagtagtttggaagagactgccggaacaaccgtcgagg |
112 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42623425 |
agcagaaaagaagtcggggcatggtaattcatctttagaggtgccgcgacaaatggcagcccaaatagtttggaagagactgccggaacaaccgtcgagg |
42623524 |
T |
|
| Q |
113 |
agggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagtgca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42623525 |
agggtatggagattgcaagtacctatagctattccaccacaattgaatatattaacttgtacaagtacttgtggtaaatctttttcttcatttgagtgca |
42623624 |
T |
|
| Q |
213 |
tcttattaggctcacatggaagcaatttattaagaaactctagcttaggtggtgtgagaaattcaaccatggtttgatttaccttggcttccaagtaaat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42623625 |
tcttattaggctcacatggaagcaatttattaagaaactctagcttaggtggtgtgagaaattcaaccatggtttgatttaccttggcttccaagtaaat |
42623724 |
T |
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| Q |
313 |
agcaccttc |
321 |
Q |
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||||||||| |
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| T |
42623725 |
agcaccttc |
42623733 |
T |
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