View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4910_low_19 (Length: 332)

Name: NF4910_low_19
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4910_low_19
NF4910_low_19
[»] chr2 (1 HSPs)
chr2 (1-300)||(13340967-13341263)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 13340967 - 13341263
Alignment:
Q  1 aaaccgaacagaattggacagaaaaatctcgccatcacactgagtaaacattcatttgtggtcaacttcataatgaacagaaaaacaccataaacattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13340967 aaaccgaacagaattggacagaaaaatctcgccatcacactaagtaaacattcatatgtggtcaacttcataatgaacagaaaaacaccataaacattca 13341066  T
Q  101 aggaccacaaataatttaagaggccaacatgtataagaatttataatttaattaagggattaaaataaacnnnnnnnncttaatggatcaaagtaaaatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||        ||||||||||||||||||||||    
T  13341067 aggaccacaaataatttaagaggccaacatgtataagaatttataat----ttaagggattaaaataaacaaaaaaaacttaatggatcaaagtaaaatc 13341162  T
Q  201 tagaaatcagtggaaggacataagtgaaatttagnnnnnnnncttatgtttagaaaaagagaaa-agaaactgtatattttctctaatttattaactttt 299  Q
    ||||||||||||||||||||||||||||||||||        |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  13341163 tagaaatcagtggaaggacataagtgaaatttagttttttttcttatgtttagaaaaagaaaaagaaaaactgtatattttctctaatttattaactttt 13341262  T

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