View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4910_low_2 (Length: 517)

Name: NF4910_low_2
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4910_low_2
NF4910_low_2
[»] chr5 (13 HSPs)
chr5 (13-502)||(30581909-30582397)
chr5 (225-395)||(9839995-9840166)
chr5 (304-419)||(4771762-4771878)
chr5 (286-396)||(28346553-28346662)
chr5 (273-374)||(28593041-28593142)
chr5 (304-421)||(21147715-21147833)
chr5 (304-395)||(33655601-33655692)
chr5 (319-373)||(2004469-2004523)
chr5 (276-332)||(9688452-9688508)
chr5 (347-414)||(27458679-27458747)
chr5 (304-395)||(7016286-7016377)
chr5 (319-360)||(2003378-2003419)
chr5 (347-395)||(43319248-43319296)
[»] chr6 (9 HSPs)
chr6 (225-413)||(23929219-23929408)
chr6 (225-411)||(8634688-8634876)
chr6 (245-411)||(7052302-7052469)
chr6 (304-419)||(6196935-6197051)
chr6 (347-421)||(1392207-1392282)
chr6 (311-419)||(30878780-30878889)
chr6 (347-417)||(3608054-3608125)
chr6 (304-413)||(2300150-2300260)
chr6 (347-418)||(2238989-2239061)
[»] chr3 (24 HSPs)
chr3 (229-382)||(7318989-7319142)
chr3 (229-382)||(45135608-45135762)
chr3 (245-395)||(6976125-6976275)
chr3 (304-420)||(3999142-3999259)
chr3 (239-359)||(23535679-23535799)
chr3 (304-413)||(33995991-33996101)
chr3 (304-395)||(6131028-6131119)
chr3 (304-414)||(19254471-19254582)
chr3 (304-395)||(51699068-51699159)
chr3 (304-413)||(995484-995594)
chr3 (347-419)||(6590120-6590193)
chr3 (347-419)||(10138719-10138792)
chr3 (273-413)||(46749923-46750063)
chr3 (347-414)||(25418986-25419054)
chr3 (309-416)||(54626077-54626185)
chr3 (347-417)||(35338310-35338381)
chr3 (292-383)||(46174704-46174795)
chr3 (304-413)||(44761619-44761729)
chr3 (347-395)||(28145626-28145675)
chr3 (304-412)||(33807165-33807274)
chr3 (347-422)||(6034682-6034758)
chr3 (273-325)||(10055131-10055183)
chr3 (275-339)||(12105207-12105271)
chr3 (347-395)||(20498836-20498884)
[»] chr4 (29 HSPs)
chr4 (229-382)||(5104850-5105004)
chr4 (273-373)||(37369473-37369573)
chr4 (262-362)||(16019804-16019904)
chr4 (303-417)||(55975122-55975237)
chr4 (248-361)||(9163608-9163721)
chr4 (304-420)||(42787179-42787296)
chr4 (303-422)||(27453699-27453819)
chr4 (276-359)||(7853865-7853947)
chr4 (237-413)||(11090688-11090866)
chr4 (273-360)||(24887378-24887465)
chr4 (304-413)||(7007854-7007964)
chr4 (275-412)||(41581433-41581571)
chr4 (287-340)||(21309115-21309168)
chr4 (304-420)||(22202630-22202747)
chr4 (309-417)||(40536562-40536671)
chr4 (225-376)||(20539812-20539960)
chr4 (347-417)||(3437138-3437209)
chr4 (304-395)||(25331650-25331741)
chr4 (347-417)||(49469819-49469890)
chr4 (273-339)||(12193385-12193451)
chr4 (304-413)||(34228161-34228271)
chr4 (304-417)||(41880589-41880703)
chr4 (347-419)||(7246541-7246614)
chr4 (347-421)||(23465505-23465581)
chr4 (313-413)||(28099685-28099786)
chr4 (347-413)||(24130462-24130529)
chr4 (347-413)||(25446681-25446748)
chr4 (245-388)||(36478839-36478982)
chr4 (347-418)||(41321298-41321370)
[»] chr2 (14 HSPs)
chr2 (225-374)||(21988160-21988310)
chr2 (304-420)||(305090-305206)
chr2 (304-413)||(44766441-44766551)
chr2 (310-413)||(22551375-22551479)
chr2 (304-383)||(14198215-14198294)
chr2 (315-424)||(1188667-1188776)
chr2 (304-413)||(24776861-24776971)
chr2 (304-413)||(32125833-32125943)
chr2 (304-416)||(43848164-43848277)
chr2 (304-395)||(1789976-1790067)
chr2 (287-382)||(13436106-13436201)
chr2 (311-413)||(20156345-20156448)
chr2 (304-395)||(31170115-31170206)
chr2 (311-383)||(34027549-34027621)
[»] chr1 (15 HSPs)
chr1 (225-412)||(26284222-26284410)
chr1 (304-422)||(956055-956174)
chr1 (273-395)||(42658541-42658663)
chr1 (273-373)||(27199031-27199131)
chr1 (311-419)||(1923091-1923200)
chr1 (309-419)||(6303770-6303881)
chr1 (225-339)||(9577171-9577285)
chr1 (304-413)||(49197762-49197872)
chr1 (347-420)||(50192065-50192139)
chr1 (304-419)||(19451276-19451392)
chr1 (304-413)||(35280253-35280363)
chr1 (347-395)||(47784809-47784857)
chr1 (311-358)||(19350238-19350285)
chr1 (304-413)||(28823883-28823993)
chr1 (304-413)||(45759459-45759569)
[»] chr7 (19 HSPs)
chr7 (347-422)||(31401962-31402038)
chr7 (304-413)||(8078645-8078755)
chr7 (304-419)||(727972-728088)
chr7 (304-413)||(12893943-12894053)
chr7 (304-413)||(39218883-39218993)
chr7 (304-413)||(44343002-44343112)
chr7 (304-419)||(7718795-7718911)
chr7 (304-415)||(43392024-43392136)
chr7 (347-417)||(34695897-34695968)
chr7 (304-413)||(18916445-18916555)
chr7 (225-339)||(19251934-19252048)
chr7 (304-413)||(47879687-47879797)
chr7 (304-413)||(47914765-47914875)
chr7 (276-362)||(48152385-48152471)
chr7 (304-419)||(7717864-7717980)
chr7 (311-413)||(3635118-3635221)
chr7 (303-413)||(40996130-40996241)
chr7 (311-395)||(977364-977448)
chr7 (347-395)||(34009583-34009631)
[»] chr8 (15 HSPs)
chr8 (308-417)||(24214686-24214796)
chr8 (304-413)||(10391695-10391805)
chr8 (304-417)||(32711125-32711239)
chr8 (304-413)||(33850929-33851039)
chr8 (304-417)||(42936790-42936904)
chr8 (347-419)||(7506433-7506506)
chr8 (262-322)||(4949650-4949710)
chr8 (303-422)||(5576126-5576246)
chr8 (286-388)||(33971924-33972026)
chr8 (273-340)||(14028020-14028087)
chr8 (347-413)||(42938024-42938091)
chr8 (347-424)||(37915545-37915623)
chr8 (304-412)||(24501324-24501433)
chr8 (347-423)||(42734806-42734883)
chr8 (225-321)||(29976828-29976924)
[»] scaffold0151 (1 HSPs)
scaffold0151 (304-417)||(24529-24643)
[»] scaffold0400 (1 HSPs)
scaffold0400 (304-395)||(14600-14691)
[»] scaffold0365 (1 HSPs)
scaffold0365 (304-395)||(15243-15334)
[»] scaffold0287 (1 HSPs)
scaffold0287 (311-413)||(10864-10967)
[»] scaffold0113 (1 HSPs)
scaffold0113 (349-417)||(37662-37731)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 502
Target Start/End: Complemental strand, 30582397 - 30581909
Alignment:
Q  13 attctaaaagacaaacatggatatgcaagaacaataatttacacaaaataatacaccaaaaacaatatcttttttaatggaataatttgaattttaacaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30582397 attctaaaagacaaacatggatatgcaagaacaataatttacacaaaataatacaccaaaaacaatatattttttaatggaataatttgaattttaacaa 30582298  T
Q  113 atgaaaaagtgtttccttaaaatnnnnnnnnn--tgaaaaggtgtgcattgaaattatcatcttaaagagtgttattatcatttttcgttaatgattctt 210  Q
    ||||||||||||||||||||||            |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30582297 atgaaaaagtgtttccttaaaaaaaaaaaaaaaatgaaaaggtgtgtattgaaattatcatcataaagagtgttattatcatttttctttaatgattctt 30582198  T
Q  211 taaaagcacattggaatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacag 310  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||    
T  30582197 taaaagcacattgaaatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaattctttgaaatccaaattacaaattttaatag 30582098  T
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattctaattcaataca 410  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||| |||||||||||||||||||||    
T  30582097 tcttttaaagtcttaaaaatcactaaaattatgtatagtcttttaaaatccacaagactttttcatacaaaaattgtcttttaaattctaattcaataca 30581998  T
Q  411 ccctccttagatttcaacttgtcaagaacccacataaatttggtaaagaaaagaacacacattaaatattctatttattggtaattattgat 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   | |||||||||||||||||||    
T  30581997 ccctccttagatttcaacttgtcaagaacccacataaatttggtaaaaaaaagaacacacattaaata---tgtttattggtaattattgat 30581909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 225 - 395
Target Start/End: Complemental strand, 9840166 - 9839995
Alignment:
Q  225 aatcttataaa-cctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatct 323  Q
    ||||||||||| || | ||||||||| ||||||| || |||||||    | ||||||||||||||||| ||||| |||| |||||| |||||||||||||    
T  9840166 aatcttataaatcccacaaagtcattccaaatcctataaaatcttcagatgtaaatcctttaaaatcccaattacaaatcttaacaatcttttaaaatct 9840067  T
Q  324 taaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    ||||||||| | ||||  |  | ||| |||||||||||| |||||||||||||||||||| |||| ||||||    
T  9840066 taaaagtcattcaaatctttcaaagttttttaaaatccacaagacttttttatacaaaaattgtcttttaaa 9839995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 4771878 - 4771762
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | ||||||| ||||||| |||| |||||||||||||||  || ||||||||| ||||||| |||| ||| |||| |||||    
T  4771878 ttaatagtcttttaaaatcatcaaagtcattaaaattctgtaaagtcttttaaaatcctcaaaacttttttaaacaaaaattgtcctttaaaatcctaat 4771779  T
Q  403 tcaatacaccctcctta 419  Q
      |||||||||||||||    
T  4771778 caaatacaccctcctta 4771762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 396
Target Start/End: Complemental strand, 28346662 - 28346553
Alignment:
Q  286 aaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaact 385  Q
    |||| ||||||| ||||||| | |||||||||||||||||||||||| ||||||  || ||||   ||||||||||| |||||||||||||||||||| |    
T  28346662 aaattcaaattacaaattttgatagtcttttaaaatcttaaaagtcattaaaatcttgcatag-agtttaaaatccacaagacttttttatacaaaaatt 28346564  T
Q  386 gtcatttaaat 396  Q
     || |||||||    
T  28346563 atcttttaaat 28346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 28593142 - 28593041
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagactttt 372  Q
    |||||||||||| |||||||||||| |||| || | | |||||||||||||||||||||| ||||||  |  ||||| |||||||||||| ||||| |||    
T  28593142 tataaatcctttgaaatccaaattacaaatcttgagaatcttttaaaatcttaaaagtcattaaaatctttcatagtattttaaaatccacaagaccttt 28593043  T
Q  373 tt 374  Q
    ||    
T  28593042 tt 28593041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 21147715 - 21147833
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | | |||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  21147715 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttggaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 21147814  T
Q  403 tcaatacaccctccttaga 421  Q
     |||||||||| |||||||    
T  21147815 ccaatacaccccccttaga 21147833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 33655692 - 33655601
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  33655692 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaa 33655601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 2004469 - 2004523
Alignment:
Q  319 aatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttt 373  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||  |||||||||    
T  2004469 aatcttaaaagtcattaaaattttgtgtagtcttttaaaatccactagacttttt 2004523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 9688508 - 9688452
Alignment:
Q  276 aaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtca 332  Q
    ||||||||| ||||||| || |||||| || | ||||||||||||||||||||||||    
T  9688508 aaatcctttgaaatccatatgataaatcttgatagtcttttaaaatcttaaaagtca 9688452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 27458747 - 27458679
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccct 414  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| |||||||||||    
T  27458747 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccct 27458679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 7016377 - 7016286
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  || ||||||||| ||||||| |||| ||||||    
T  7016377 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaaaacttttttaaacaaaaattgtcctttaaa 7016286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 2003378 - 2003419
Alignment:
Q  319 aatcttaaaagtcactaaaattatgtatagtcttttaaaatc 360  Q
    |||||||||||||| ||||||  |||||||||||||||||||    
T  2003378 aatcttaaaagtcattaaaatcttgtatagtcttttaaaatc 2003419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 43319296 - 43319248
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  43319296 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaa 43319248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 225 - 413
Target Start/End: Original strand, 23929219 - 23929408
Alignment:
Q  225 aatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatctt 324  Q
    ||||||||||| | ||||||||||||||||||| |||| |||||||  | |||||||| |||||||| |||||||||| |||| ||||||||||||||||    
T  23929219 aatcttataaatccataaagtcatttcaaatcctatgacatcttatgatgtaaatcctctaaaatcccaattataaatcttaatagtcttttaaaatctt 23929318  T
Q  325 aaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccc 413  Q
    |||||| | ||||||  |  | ||||||||||||| || | |||||||||||||||||| |||| ||| |||| ||||| ||||||||||    
T  23929319 aaaagttattaaaatctttcaaagtcttttaaaattcacaggacttttttatacaaaaattgtcttttaaaatcctaatccaatacaccc 23929408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 225 - 411
Target Start/End: Complemental strand, 8634876 - 8634688
Alignment:
Q  225 aatcttataaacct-ataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatct 323  Q
    ||||||||||| || ||||||||||| ||||||| || ||||||||   | |||||||||||||||||  |||| |||| |||||| |||||||||||||    
T  8634876 aatcttataaatctcataaagtcattccaaatcctataaaatcttaagatgtaaatcctttaaaatccctattacaaatcttaacaatcttttaaaatct 8634777  T
Q  324 taaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacac 411  Q
    ||||||||| | ||||  |  | ||||||||||||| || |||||||||||||| ||||| | || ||| |||||| |||| |||||||    
T  8634776 taaaagtcattcaaatctttcaaagtcttttaaaattcacaagacttttttatagaaaaaatttcttttaaaattcaaattgaatacac 8634688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 411
Target Start/End: Original strand, 7052302 - 7052469
Alignment:
Q  245 tcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgt 344  Q
    |||||||||||||  | |||||||||    ||||||| || ||||||||||| ||||| | ||  |||||| |||||| | ||||||| |||||| |||     
T  7052302 tcatttcaaatcctttaaaatcttatgagttaaatccattgaaatccaaattgtaaatctcaattgtctttcaaaatcatcaaagtcattaaaatcatgc 7052401  T
Q  345 atagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacac 411  Q
    | ||||||||||||| |  |||||||||||| ||||||| |||| ||| |||| ||||||||||||||    
T  7052402 aaagtcttttaaaattcttaagacttttttaaacaaaaattgtcctttaaaatcctaattcaatacac 7052469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 6197051 - 6196935
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  6197051 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttggaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 6196952  T
Q  403 tcaatacaccctcctta 419  Q
     |||||||||| |||||    
T  6196951 ccaatacacccccctta 6196935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 1392207 - 1392282
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctccttaga 421  Q
    |||||||||||||||  |||||||||||| |||||||  ||||||| |||| ||||| ||||||||||||||||||    
T  1392207 agtcttttaaaatcctcaagacttttttaaacaaaaatcgtcatttaaaatcctaatccaatacaccctccttaga 1392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 419
Target Start/End: Original strand, 30878780 - 30878889
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatac 409  Q
    |||||||||||| ||||||||| ||||||  || ||| |||||||| |||||  ||||||||| |||||||||  ||| ||| ||||||||||  |||||    
T  30878780 tcttttaaaatcctaaaagtcattaaaatcttgcataatcttttaatatccactagactttttcatacaaaaatagtcttttaaaattctaatcaaatac 30878879  T
Q  410 accctcctta 419  Q
    |||| |||||    
T  30878880 acccccctta 30878889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 3608054 - 3608125
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcct 417  Q
    |||||||||||||||  |||||||||||| ||||||| | || ||| |||| ||||||||||||||||||||    
T  3608054 agtcttttaaaatcctaaagacttttttaaacaaaaattatcctttaaaatcctaattcaatacaccctcct 3608125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 2300260 - 2300150
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| ||| |||||||||| | |||||||  |||||  || | |||||||||||||||  |||| ||||||| ||||||| |||| ||| |||| |||||    
T  2300260 ttaatagtattttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaat 2300161  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  2300160 ccaatacaccc 2300150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 2238989 - 2239061
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taattcaatacaccctcctt 418  Q
    ||||||||||||| | ||||||||||||| ||||||  |||| |||||| || |||| ||||||||| |||||    
T  2238989 agtcttttaaaattctgaagacttttttaaacaaaagttgtcctttaaaatcgtaatccaatacaccatcctt 2239061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 7318989 - 7319142
Alignment:
Q  229 ttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaa 328  Q
    ||||||| | |||||||||| |||||||| ||||||||||||  | ||||||||||||||||  ||||| |||| |||| ||||||||||||||||||||    
T  7318989 ttataaatccataaagtcatctcaaatcctatgaaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaatcttaaaa 7319088  T
Q  329 gtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaa 382  Q
    |||| ||||||  |  | |||||||||||||||| |||| ||||||||||||||    
T  7319089 gtcattaaaatctttcaaagtcttttaaaatccacaagatttttttatacaaaa 7319142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 45135608 - 45135762
Alignment:
Q  229 ttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaa 328  Q
    ||||||| | |||||||||| |||||||| ||||||||||||  | ||||||||||||||||  ||||| |||| |||| ||||||||||||| ||||||    
T  45135608 ttataaatccataaagtcatctcaaatcctatgaaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaattttaaaa 45135707  T
Q  329 gtcactaaaattatgtatagtcttttaaaatccagaagac-ttttttatacaaaa 382  Q
    |||| ||||||  |  | ||||||||||||| || ||||| ||||||||||||||    
T  45135708 gtcattaaaatctttcaaagtcttttaaaatacacaagactttttttatacaaaa 45135762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 395
Target Start/End: Original strand, 6976125 - 6976275
Alignment:
Q  245 tcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgt 344  Q
    |||||||||||||  | |||||||||  | ||||||| || ||||||||||| ||||| || | |||||||||||||| ||||||||| ||||||  |      
T  6976125 tcatttcaaatcctttaaaatcttatgatgtaaatccattgaaatccaaattgtaaatcttgatagtcttttaaaatcataaaagtcattaaaatcctac 6976224  T
Q  345 atagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    | |||||||||||||||   |||||||||||  |||||| |||| ||||||    
T  6976225 aaagtcttttaaaatccttgagacttttttaagcaaaaattgtcctttaaa 6976275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 420
Target Start/End: Complemental strand, 3999259 - 3999142
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  3999259 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 3999160  T
Q  403 tcaatacaccctccttag 420  Q
     |||||||||| ||||||    
T  3999159 ccaatacaccccccttag 3999142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 359
Target Start/End: Complemental strand, 23535799 - 23535679
Alignment:
Q  239 ataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaa 338  Q
    ||||| |||||||||||||  | ||||||||| || ||||||| || ||||||||||| ||||| || | ||| |||||||||| ||||||||  |||||    
T  23535799 ataaaatcatttcaaatcctttaaaatcttatagtgtaaatccattgaaatccaaattgtaaatcttgatagttttttaaaatcataaaagtcgttaaaa 23535700  T
Q  339 ttatgtatagtcttttaaaat 359  Q
    | ||| | | |||||||||||    
T  23535699 tcatgcaaaatcttttaaaat 23535679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 33996101 - 33995991
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taat 402  Q
    |||| |||||||||||||| | |||||||  |||||| || | ||||||||||||| |  |||||||||||| ||||||| |||| |||||| || ||||    
T  33996101 ttaatagtcttttaaaatcatcaaagtcatcaaaattttgcaaagtcttttaaaattctcaagacttttttaaacaaaaattgtcctttaaaatcttaat 33996002  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  33996001 ccaatacaccc 33995991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 6131119 - 6131028
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  6131119 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctaaagacttttttaaacaaaaattgtcctttaaa 6131028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 414
Target Start/End: Original strand, 19254471 - 19254582
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | ||||||||||||||   |||||||||||| ||||||| |||| ||| |||| |||||    
T  19254471 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcttcaagacttttttaaacaaaaattgtcctttaaaatcctaat 19254570  T
Q  403 tcaatacaccct 414  Q
     |||||||||||    
T  19254571 ccaatacaccct 19254582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 51699159 - 51699068
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  51699159 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatccttaagacttttttaaacaaaaattgtcctttaaa 51699068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 995594 - 995484
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||| ||||||| ||||||| |||| ||| |||| |||||    
T  995594 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaat 995495  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  995494 ccaatacaccc 995484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 6590120 - 6590193
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcctta 419  Q
    |||||||||||||||  |||||||| ||| ||||||| |||| ||| |||| ||||| ||||||||||||||||    
T  6590120 agtcttttaaaatcctcaagactttcttaaacaaaaattgtcctttaaaatcctaatccaatacaccctcctta 6590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 10138792 - 10138719
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcctta 419  Q
    |||||||||||||||  |||| ||||||| ||||||| |||| ||| |||| ||||| ||||||||||||||||    
T  10138792 agtcttttaaaatccttaagaattttttaaacaaaaattgtcctttaaaatcctaatccaatacaccctcctta 10138719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 413
Target Start/End: Original strand, 46749923 - 46750063
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagactttt 372  Q
    ||||||||| || |||||||||||| |||| || | | ||| |||||||| ||||||||| ||||||  |  ||| ||||||||||||||   |||||||    
T  46749923 tataaatcccttgaaatccaaattacaaatcttgagaatctcttaaaatcgtaaaagtcattaaaatcttcaataatcttttaaaatccactggactttt 46750022  T
Q  373 ttatacaaaaactgtcatttaaattc-taattcaatacaccc 413  Q
    | || |||||| |||| |||||| || |||| ||||||||||    
T  46750023 tcat-caaaaattgtcttttaaaatcgtaatccaatacaccc 46750063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 414
Target Start/End: Original strand, 25418986 - 25419054
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccct 414  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| |||||||||||    
T  25418986 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccct 25419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 416
Target Start/End: Original strand, 54626077 - 54626185
Alignment:
Q  309 agtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaat 407  Q
    |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| ||||| ||||    
T  54626077 agtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaat 54626176  T
Q  408 acaccctcc 416  Q
    ||| |||||    
T  54626177 acatcctcc 54626185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 35338310 - 35338381
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcct 417  Q
    ||||||||||||||   |||||||||||| ||||||| |||| ||| |||| ||||| ||||||||||||||    
T  35338310 agtcttttaaaatcattaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccctcct 35338381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 46174704 - 46174795
Alignment:
Q  292 aaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaa 383  Q
    ||||| || ||||| | |||||||||||||||||||||||  |||||| ||| | | ||||||||||| |  || ||||||||| |||||||    
T  46174704 aaattgtagattttgatagtcttttaaaatcttaaaagtccttaaaatcatgcaaaatcttttaaaattctcaaaacttttttaaacaaaaa 46174795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 44761729 - 44761619
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  |  | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| |||||    
T  44761729 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctacaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaat 44761630  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  44761629 ccaatacaccc 44761619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 28145675 - 28145626
Alignment:
Q  347 agtcttttaaaatccagaagactt-ttttatacaaaaactgtcatttaaa 395  Q
    |||||||||||||||| ||||||| ||||||||||||| |||| ||||||    
T  28145675 agtcttttaaaatccacaagactttttttatacaaaaattgtcttttaaa 28145626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 33807274 - 33807165
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | | |||||||||||||  |||||||||||| | ||||| |||| ||| |||| |||||    
T  33807274 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaataaaaattgtcctttaaaatcctaat 33807175  T
Q  403 tcaatacacc 412  Q
     |||||||||    
T  33807174 ccaatacacc 33807165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 6034758 - 6034682
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctccttagat 422  Q
    ||||||||||||||||  |||||||||||  |||| | |||| ||| |||| ||||||||||||||| |||| ||||    
T  6034758 agtcttttaaaatccacgagacttttttaagcaaacattgtcttttaaaatcctaattcaatacaccatcctaagat 6034682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 10055183 - 10055131
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatctta 325  Q
    |||||||||||| |||||||||||| |||| || | | |||||||||||||||    
T  10055183 tataaatcctttgaaatccaaattacaaatcttgagaatcttttaaaatctta 10055131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 12105207 - 12105271
Alignment:
Q  275 taaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaat 339  Q
    ||||||| || |||||||||||  ||||||| | |||||||||||||| | ||||||| ||||||    
T  12105207 taaatccattgaaatccaaattgaaaattttgatagtcttttaaaatcatgaaagtcattaaaat 12105271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 20498836 - 20498884
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  20498836 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaa 20498884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 5104850 - 5105004
Alignment:
Q  229 ttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaa 328  Q
    ||||||| | |||||||||| |||||||| ||||||||||||  | ||||||||||||||||  ||||| |||| |||| ||||||||||||||||||||    
T  5104850 ttataaatccataaagtcatctcaaatcctatgaaatcttatgatgtaaatcctttaaaatctcaattacaaatcttaatagtcttttaaaatcttaaaa 5104949  T
Q  329 gtcactaaaattatgtatagtcttttaaaatccagaagac-ttttttatacaaaa 382  Q
    |||| ||||||  |  | |||||||||||||||| ||||| ||||||||||||||    
T  5104950 gtcattaaaatctttcaaagtcttttaaaatccacaagactttttttatacaaaa 5105004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 373
Target Start/End: Complemental strand, 37369573 - 37369473
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagactttt 372  Q
    ||||||||| || |||||||||||| |||| |||| | |||||||||||||||||||||| ||||||  || ||||||||||||||||||  ||||||||    
T  37369573 tataaatcccttgaaatccaaattacaaatcttaagaatcttttaaaatcttaaaagtcattaaaatcttgcatagtcttttaaaatccactagactttt 37369474  T
Q  373 t 373  Q
    |    
T  37369473 t 37369473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 262 - 362
Target Start/End: Original strand, 16019804 - 16019904
Alignment:
Q  262 aaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatcc 361  Q
    |||||||||  || ||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||  |||||  || | |||||||||||||||    
T  16019804 aaatcttatgatacaaatcctttaaaatccatatgataaattttgatagtcttttaaaatcttaaaagtcatgaaaatcttgcaaagtcttttaaaatcc 16019903  T
Q  362 a 362  Q
    |    
T  16019904 a 16019904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 417
Target Start/End: Original strand, 55975122 - 55975237
Alignment:
Q  303 tttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaa 401  Q
    ||||| |||||||||||||| | |||||||  ||||| || || |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||    
T  55975122 tttaatagtcttttaaaatcatcaaagtcatcaaaatcatctaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaa 55975221  T
Q  402 ttcaatacaccctcct 417  Q
    | ||||||||||||||    
T  55975222 tccaatacaccctcct 55975237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 248 - 361
Target Start/End: Original strand, 9163608 - 9163721
Alignment:
Q  248 tttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtata 347  Q
    ||||||||| | | ||||||||| |||||||||| || ||||||||||| ||||| || | | |||||||||||| ||||||||| |||||| ||| | |    
T  9163608 tttcaaatctcttaaaatcttatggtataaatccattgaaatccaaattgtaaatcttgatattcttttaaaatcataaaagtcattaaaatcatggaaa 9163707  T
Q  348 gtcttttaaaatcc 361  Q
     |||||||||||||    
T  9163708 atcttttaaaatcc 9163721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 304 - 420
Target Start/End: Original strand, 42787179 - 42787296
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||| || | | ||||||||||||   |||||||||||| ||||||| |||| ||| ||||||||||    
T  42787179 ttaatagtcttttaaaatcatcaaagtcataaaaattctgcaaaatcttttaaaatcttcaagacttttttaaacaaaaattgtcctttaaaattctaat 42787278  T
Q  403 tcaatacaccctccttag 420  Q
     |||||||||||||||||    
T  42787279 ccaatacaccctccttag 42787296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 27453819 - 27453699
Alignment:
Q  303 tttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaa 401  Q
    ||||| |||||||||||||  | |||||||  |||||||||   ||||||||||||||   || ||||||||| ||||||| | |||||| |||| ||||    
T  27453819 tttaatagtcttttaaaataattaaagtcatcaaaattatgctaagtcttttaaaatcttcaaaacttttttaaacaaaaattatcatttaaaatcctaa 27453720  T
Q  402 ttcaatacaccctccttagat 422  Q
    |||||||||||||||||||||    
T  27453719 ttcaatacaccctccttagat 27453699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 276 - 359
Target Start/End: Complemental strand, 7853947 - 7853865
Alignment:
Q  276 aaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaat 359  Q
    ||||||||| |||||||||||| |||||| |  |||||||||||||||||||||||| ||||||| || ||| |||||||||||    
T  7853947 aaatcctttgaaatccaaattacaaatttgat-agtcttttaaaatcttaaaagtcattaaaattttgcatattcttttaaaat 7853865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 413
Target Start/End: Original strand, 11090688 - 11090866
Alignment:
Q  237 ctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaa 336  Q
    ||||||| |||||| ||||||  | |||||||||  | ||||||| || ||||||||||||||||  || | |||||||||||||| | ||||||| | |    
T  11090688 ctataaaatcattttaaatcctttaaaatcttatgatgtaaatccattgaaatccaaattataaaacttcatagtcttttaaaatcatgaaagtcattga 11090787  T
Q  337 aattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaa--attctaattcaatacaccc 413  Q
    ||| ||  | | ||||||||||||   ||||||||||||  |||| | |||| |||||  |||||||| ||||||||||    
T  11090788 aatcatacaaaatcttttaaaatcttcaagacttttttaagcaaacattgtcctttaaagattctaatccaatacaccc 11090866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 360
Target Start/End: Complemental strand, 24887465 - 24887378
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatc 360  Q
    ||||||||| || |||||||||||| |||| ||||   |||||||||||||||||||||| ||||||  |  ||||||||||||||||    
T  24887465 tataaatcccttgaaatccaaattacaaatcttaagtatcttttaaaatcttaaaagtcattaaaatcttacatagtcttttaaaatc 24887378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 7007854 - 7007964
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||| || | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| |||||    
T  7007854 ttaatagtcttttaaaatcatcaaagtcatcaaaattctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaat 7007953  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  7007954 ccaatacaccc 7007964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 275 - 412
Target Start/End: Complemental strand, 41581571 - 41581433
Alignment:
Q  275 taaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagactttttt 374  Q
    ||||||| || |||| |||||| |||||  |||| ||||||||||||| | | ||||| |||||||||  | ||||||||||| | |  |||||||||||    
T  41581571 taaatccattcaaatgcaaattgtaaatcctaaccgtcttttaaaatcatgagagtcattaaaattatacaaagtcttttaaatttctcaagactttttt 41581472  T
Q  375 atacaaaaactgtcatttaaattc-taattcaatacacc 412  Q
    | | ||||| ||| ||||||| || ||||||||||||||    
T  41581471 aaataaaaattgttatttaaaatcataattcaatacacc 41581433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 21309168 - 21309115
Alignment:
Q  287 aatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaatt 340  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||| |||||||    
T  21309168 aatccaaattgtaaattttaatagtgttttaaaatcttaaaagtcattaaaatt 21309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 420
Target Start/End: Original strand, 22202630 - 22202747
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  ||||||| |||| ||||||| |||| ||| |||| |||||    
T  22202630 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttctttaaacaaaaattgtcctttaaaatcctaat 22202729  T
Q  403 tcaatacaccctccttag 420  Q
     |||||||||| ||||||    
T  22202730 ccaatacaccccccttag 22202747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 417
Target Start/End: Complemental strand, 40536671 - 40536562
Alignment:
Q  309 agtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taattcaat 407  Q
    |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || |||||| || |||| ||||    
T  40536671 agtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatccccaagacttttttaaacaaaaattatcctttaaaatcataatccaat 40536572  T
Q  408 acaccctcct 417  Q
    ||||||||||    
T  40536571 acaccctcct 40536562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 20539812 - 20539960
Alignment:
Q  225 aatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatctt 324  Q
    |||||||| || | ||||| ||| ||||||||| || |||||||||  ||||| |||| |  ||| ||||||| ||||||| | | ||||||||||||||    
T  20539812 aatcttatgaatccataaaatcacttcaaatcctataaaatcttatgatataa-tcctatgtaattcaaattacaaattttgataatcttttaaaatctt 20539910  T
Q  325 aaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttat 376  Q
    |||||||  ||||||  |  | |||||||||| ||||| |||||||||||||    
T  20539911 aaaagtcgttaaaat--ttcacagtcttttaatatccacaagacttttttat 20539960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 3437138 - 3437209
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcct 417  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||||||||||||| ||||    
T  3437138 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaatcctaattcaatacaccatcct 3437209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 25331650 - 25331741
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  25331650 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaa 25331741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 49469819 - 49469890
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcct 417  Q
    |||| ||||||||||  |||||||||||| ||||||| |||| ||| |||||||||| ||||||||||||||    
T  49469819 agtcctttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaattctaatccaatacaccctcct 49469890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 339
Target Start/End: Original strand, 12193385 - 12193451
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaat 339  Q
    |||||||| ||||||||||||||  ||||| || | ||||||||||||||||||| |||| ||||||    
T  12193385 tataaatcttttaaaatccaaatcgtaaatcttcatagtcttttaaaatcttaaatgtcattaaaat 12193451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 34228271 - 34228161
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || |||||| || ||||    
T  34228271 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcataat 34228172  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  34228171 ccaatacaccc 34228161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 41880703 - 41880589
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  | |||||||||| ||||||| |||| ||| |||| |||||    
T  41880703 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcatgacttttttaaacaaaaattgtcctttaaaatcctaat 41880604  T
Q  403 tcaatacaccctcct 417  Q
     ||||||||| ||||    
T  41880603 ccaatacaccatcct 41880589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 7246614 - 7246541
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taattcaatacaccctcctta 419  Q
    |||||||||||||||  |||||||||||| ||||||| | || |||||| || |||| ||||||||||||||||    
T  7246614 agtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcataatccaatacaccctcctta 7246541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 23465505 - 23465581
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt--aaattctaattcaatacaccctccttaga 421  Q
    ||||||||||||| |  |||||||||||| ||||||| |||| |||  |||| ||||| ||||||||||||||||||    
T  23465505 agtcttttaaaattcttaagacttttttaaacaaaaattgtcctttaaaaatcctaatccaatacaccctccttaga 23465581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 28099786 - 28099685
Alignment:
Q  313 ttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacac 411  Q
    |||||||||  ||||||||| ||||||  || ||| |||||||||||  |  ||||||||| ||||||||| |||| ||| |||| ||||||||||||||    
T  28099786 ttttaaaattctaaaagtcattaaaatcttgcataatcttttaaaatttattagactttttcatacaaaaattgtcttttaaaatcctaattcaatacac 28099687  T
Q  412 cc 413  Q
    ||    
T  28099686 cc 28099685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 413
Target Start/End: Complemental strand, 24130529 - 24130462
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccc 413  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| ||||||||||    
T  24130529 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 24130462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 25446681 - 25446748
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccc 413  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| ||||||||||    
T  25446681 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 25446748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 388
Target Start/End: Complemental strand, 36478982 - 36478839
Alignment:
Q  245 tcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgt 344  Q
    |||||||||||||  |||||| ||||  | ||||||| || ||||| ||||| ||||| || | |||||||||||| | | ||||||| ||||||  |      
T  36478982 tcatttcaaatcctttgaaattttatgatgtaaatccattgaaatctaaattgtaaatcttgatagtcttttaaaaccgtgaaagtcattaaaatcctac 36478883  T
Q  345 atagtcttttaaaatccagaagacttttttatacaaaaactgtc 388  Q
    | ||||||||||||||   ||||||||||||  |||||| ||||    
T  36478882 aaagtcttttaaaatcttcaagacttttttaagcaaaaattgtc 36478839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 41321298 - 41321370
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcctt 418  Q
    |||||||||||||||  |||||||||||| |||||||   || ||| |||| ||||| |||||||||||||||    
T  41321298 agtcttttaaaatccttaagacttttttaaacaaaaatcatcttttaaaatcctaatccaatacaccctcctt 41321370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 225 - 374
Target Start/End: Original strand, 21988160 - 21988310
Alignment:
Q  225 aatcttataaa-cctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatct 323  Q
    ||||||||||| || | ||||||||||||||||| || ||||||||   | ||||||||||||||||| ||||| |||| |||||| |||||||||||||    
T  21988160 aatcttataaatcccacaaagtcatttcaaatcctataaaatcttaagatgtaaatcctttaaaatcccaattacaaatcttaacaatcttttaaaatct 21988259  T
Q  324 taaaagtcactaaaattatgtatagtcttttaaaatccagaagactttttt 374  Q
    ||||||||| ||||||  |  | |||||||||||||||| || ||||||||    
T  21988260 taaaagtcattaaaatctttcaaagtcttttaaaatccacaacactttttt 21988310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 420
Target Start/End: Complemental strand, 305206 - 305090
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattctaatt 403  Q
    |||| |||||||||||||||| ||||| |  ||||   || | |||||||||||||||  |||| ||||||| ||||||| |||| || |||| |||||     
T  305206 ttaatagtcttttaaaatcttcaaagttatcaaaaccctgcaaagtcttttaaaatcctcaagatttttttaaacaaaaattgtctttaaaatcctaatc 305107  T
Q  404 caatacaccctccttag 420  Q
    |||||||||||||||||    
T  305106 caatacaccctccttag 305090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 44766441 - 44766551
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | | |||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  44766441 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaatcctaat 44766540  T
Q  403 tcaatacaccc 413  Q
    |||||||||||    
T  44766541 tcaatacaccc 44766551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 22551479 - 22551375
Alignment:
Q  310 gtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taattcaata 408  Q
    ||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| |||||| || |||| |||||    
T  22551479 gtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcttaatccaata 22551380  T
Q  409 caccc 413  Q
    |||||    
T  22551379 caccc 22551375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 14198294 - 14198215
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaa 383  Q
    |||| |||||||||||||| | |||||||  |||||| |||| |||||||||||||||  || ||||||||| |||||||    
T  14198294 ttaatagtcttttaaaatcatcaaagtcatcaaaattttgtaaagtcttttaaaatcctcaaaacttttttaaacaaaaa 14198215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 424
Target Start/End: Complemental strand, 1188776 - 1188667
Alignment:
Q  315 ttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccc 413  Q
    |||||||||||||||||| | ||||  || ||| ||||||||||| ||  ||||||||| ||||||||| | || ||| |||| ||||| ||||||||||    
T  1188776 ttaaaatcttaaaagtcattcaaatcttgcataatcttttaaaattcattagactttttcatacaaaaattttcttttaaaatcctaatccaatacaccc 1188677  T
Q  414 tccttagattt 424  Q
     ||||||||||    
T  1188676 -ccttagattt 1188667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 24776861 - 24776971
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| | ||||| |||| ||| |||| |||||    
T  24776861 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaagaaaaattgtcctttaaaatcctaat 24776960  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  24776961 ccaatacaccc 24776971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 32125833 - 32125943
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||| |  | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| |||||    
T  32125833 ttaatagtcttttaaaatcatcaaagtcatcaaaattctacaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaat 32125932  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  32125933 ccaatacaccc 32125943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 416
Target Start/End: Original strand, 43848164 - 43848277
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taat 402  Q
    |||| |||||||||||||| |  ||||||  |||||  |||| ||||||||||||| |  |||| ||||||| ||||||| |||| |||||| || ||||    
T  43848164 ttaatagtcttttaaaatcatctaagtcatcaaaatcctgtaaagtcttttaaaattctcaagatttttttaaacaaaaattgtcttttaaaatcataat 43848263  T
Q  403 tcaatacaccctcc 416  Q
     |||||||||||||    
T  43848264 ccaatacaccctcc 43848277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 1789976 - 1790067
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  |  | |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  1789976 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttacaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaa 1790067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 382
Target Start/End: Complemental strand, 13436201 - 13436106
Alignment:
Q  287 aatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaa 382  Q
    ||||||||||||||||| ||| ||| |||||||||| | ||||||| ||||||  | || | | |||||||| |  ||||||||||||| ||||||    
T  13436201 aatccaaattataaattctaatagttttttaaaatcatgaaagtcattaaaatcctataaatttttttaaaaccttgaagacttttttaaacaaaa 13436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 20156448 - 20156345
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatac 409  Q
    |||||||||||| ||||||||| ||||||  |  ||| |||||||||||| |  ||||||||| |||||||||  ||| ||| |||| ||||| ||||||    
T  20156448 tcttttaaaatcctaaaagtcattaaaatcttacataatcttttaaaatctactagactttttcatacaaaaatagtcttttaaaatcctaatccaatac 20156349  T
Q  410 accc 413  Q
    ||||    
T  20156348 accc 20156345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 31170206 - 31170115
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||| | ||||||| |||| ||||||    
T  31170206 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagactttttaaaacaaaaattgtcctttaaa 31170115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 34027621 - 34027549
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaa 383  Q
    |||||||||||| ||||||||| ||||||  || ||| ||||||||||| ||  ||| ||||| |||||||||    
T  34027621 tcttttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaattcactagattttttcatacaaaaa 34027549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 412
Target Start/End: Original strand, 26284222 - 26284410
Alignment:
Q  225 aatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatctt 324  Q
    ||||||||||| | ||||||||||| ||||||   | |||||| ||  |||||||| ||| ||||||||||||||| |||| | ||||||||||||||||    
T  26284222 aatcttataaatccataaagtcattccaaatcttttaaaatctcatgatataaatcatttgaaatccaaattataagttttgatagtcttttaaaatctt 26284321  T
Q  325 aaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacacc 412  Q
    |||||| | ||||||  || | |||||| |||||| || |||| |||||| || ||||| |||| ||| |||  |||||||||||||||    
T  26284322 aaaagtaattaaaatcttgcaaagtcttataaaatgcacaagatttttttttaaaaaaaatgtcttttaaaaacctaattcaatacacc 26284410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 422
Target Start/End: Original strand, 956055 - 956174
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| ||||||||||    
T  956055 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaattctaat 956154  T
Q  403 tcaatacaccctccttagat 422  Q
     |||||||||||||||||||    
T  956155 ccaatacaccctccttagat 956174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 273 - 395
Target Start/End: Original strand, 42658541 - 42658663
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagactttt 372  Q
    ||||||||| || |||||||||||| |||| || | | |||||||||||||||||||||| | ||||  || ||||||||||||||||||  ||||||||    
T  42658541 tataaatccattgaaatccaaattacaaatcttgagaatcttttaaaatcttaaaagtcattgaaatcttgcatagtcttttaaaatccactagactttt 42658640  T
Q  373 ttatacaaaaactgtcatttaaa 395  Q
    | || |||||| |||| ||||||    
T  42658641 tcatgcaaaaattgtcttttaaa 42658663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 273 - 373
Target Start/End: Original strand, 27199031 - 27199131
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagactttt 372  Q
    |||||||||||| ||||||||||||  ||| || | |||||||||||||||||||||||| ||||||  || ||||||||| ||||||||  ||||||||    
T  27199031 tataaatcctttgaaatccaaattaccaatcttgatagtcttttaaaatcttaaaagtcattaaaatcttgcatagtctttcaaaatccactagactttt 27199130  T
Q  373 t 373  Q
    |    
T  27199131 t 27199131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 419
Target Start/End: Complemental strand, 1923200 - 1923091
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatac 409  Q
    |||||||||||| ||||||||| ||||||  || ||| ||||||||||||||  ||||||||| |||||||||  ||| ||| |||| ||||| ||||||    
T  1923200 tcttttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaatccactagactttttcatacaaaaatagtcttttaaaatcctaatccaatac 1923101  T
Q  410 accctcctta 419  Q
    |||| |||||    
T  1923100 acccccctta 1923091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 419
Target Start/End: Complemental strand, 6303881 - 6303770
Alignment:
Q  309 agtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaat 407  Q
    |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| ||||    
T  6303881 agtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaat 6303782  T
Q  408 acaccctcctta 419  Q
    |||||| |||||    
T  6303781 acacccccctta 6303770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 339
Target Start/End: Complemental strand, 9577285 - 9577171
Alignment:
Q  225 aatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatctt 324  Q
    ||||||||||| | ||||| |||||| ||||||  | |||||||||  | ||||||| || |||||||||||||||||  | | |||||||||||||| |    
T  9577285 aatcttataaatccataaaatcattttaaatcctttaaaatcttataatgtaaatccattgaaatccaaattataaatcctgaaagtcttttaaaatcat 9577186  T
Q  325 aaaagtcactaaaat 339  Q
     ||||||| ||||||    
T  9577185 gaaagtcattaaaat 9577171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 49197872 - 49197762
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||| || | |||||||||||||||  || ||||||||| ||||||| |||| ||| |||| |||||    
T  49197872 ttaatagtcttttaaaatcatcaaagtcatcaaaattttgcaaagtcttttaaaatcctcaaaacttttttaaacaaaaattgtcttttaaaatcctaat 49197773  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  49197772 ccaatacaccc 49197762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 420
Target Start/End: Complemental strand, 50192139 - 50192065
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctccttag 420  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| |||||||||||||||||    
T  50192139 agtcttttaaaatccttaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccctccttag 50192065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 19451392 - 19451276
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || |||||| || ||||    
T  19451392 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcataat 19451293  T
Q  403 tcaatacaccctcctta 419  Q
     |||||||||| |||||    
T  19451292 ccaatacacccccctta 19451276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 35280253 - 35280363
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| ||||||||||| || ||||||| |  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  35280253 ttaatagtcttttaaattcataaaagtaatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 35280352  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  35280353 ccaatacaccc 35280363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 47784809 - 47784857
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||||||||||||||| |||||||||||| ||||||| |||| ||||||    
T  47784809 agtcttttaaaatccataagacttttttaaacaaaaattgtcctttaaa 47784857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 358
Target Start/End: Original strand, 19350238 - 19350285
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaa 358  Q
    |||||||||||||||||| ||| ||||||| || ||||||||||||||    
T  19350238 tcttttaaaatcttaaaaatcattaaaattttgaatagtcttttaaaa 19350285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 28823993 - 28823883
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  |  | |||||||||||||||  |||||||||||| ||||||| |||| ||| ||||  ||||    
T  28823993 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttacaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttgaaatattaat 28823894  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  28823893 ccaatacaccc 28823883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 45759569 - 45759459
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  || ||||||| | ||||||| |||| ||| |||| |||||    
T  45759569 ttaatagtcttttaaaatcatcaaagtcatcaaaatgttgcaaagtcttttaaaatcctcaaaactttttcaaacaaaaattgtcctttaaaatcctaat 45759470  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  45759469 ccaatacaccc 45759459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 31401962 - 31402038
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa-ttctaattcaatacaccctccttagat 422  Q
    |||||||||||||||  |||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||    
T  31401962 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaattctaattcaatacaccctccttagat 31402038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 8078645 - 8078755
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  |||| |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||| |    
T  8078645 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgtaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctatt 8078744  T
Q  403 tcaatacaccc 413  Q
    |||||||||||    
T  8078745 tcaatacaccc 8078755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 727972 - 728088
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| ||| |||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| |||||    
T  727972 ttaatagttttttaaaatcatcaaagtcatcaaaatattgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattctcctttaaaatcctaat 728071  T
Q  403 tcaatacaccctcctta 419  Q
    |||||||||||||||||    
T  728072 tcaatacaccctcctta 728088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 12893943 - 12894053
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  12893943 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 12894042  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  12894043 ccaatacaccc 12894053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 39218993 - 39218883
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | ||||| |  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  39218993 ttaatagtcttttaaaatcatcaaagtaatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 39218894  T
Q  403 tcaatacaccc 413  Q
    |||||||||||    
T  39218893 tcaatacaccc 39218883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 44343112 - 44343002
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  44343112 ttaatagtcttttaaaatcatcaaagtcatgaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 44343013  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  44343012 ccaatacaccc 44343002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 7718911 - 7718795
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactg-tcatttaaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| || || || |||| |||||    
T  7718911 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgttctttaaaatcctaat 7718812  T
Q  403 tcaatacaccctcctta 419  Q
     ||||||||| ||||||    
T  7718811 ccaatacaccttcctta 7718795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 415
Target Start/End: Complemental strand, 43392136 - 43392024
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||| || | |||||||||||||||  || ||||||||| ||||||| | || ||| |||| |||||    
T  43392136 ttaatagtcttttaaaatcatcaaagtcatcaaaattctgcaaagtcttttaaaatcctcaatacttttttaaacaaaaattatcctttaaaatcctaat 43392037  T
Q  403 tcaatacaccctc 415  Q
     ||||||||||||    
T  43392036 ccaatacaccctc 43392024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 34695897 - 34695968
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcct 417  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| ||||||||||||||    
T  34695897 agtcttttaaaatccttaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccctcct 34695968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 18916555 - 18916445
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaattc-taat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | ||||||||||||||   |||||||||||| ||||||| |||| |||||| || ||||    
T  18916555 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcttcaagacttttttaaacaaaaattgtcctttaaaatcataat 18916456  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  18916455 ccaatacaccc 18916445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 19251934 - 19252048
Alignment:
Q  225 aatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatctt 324  Q
    |||||||||||   ||||| |||||||| ||||  | |||||||||  | ||||||| || ||||||||||| |||||  ||| |||||||||||||| |    
T  19251934 aatcttataaattcataaaatcatttcacatcctttaaaatcttatgatgtaaatccattgaaatccaaattgtaaatcctaagagtcttttaaaatcat 19252033  T
Q  325 aaaagtcactaaaat 339  Q
     ||||||| ||||||    
T  19252034 gaaagtcattaaaat 19252048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 47879687 - 47879797
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| |||||    
T  47879687 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaat 47879786  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  47879787 ccaatacaccc 47879797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 47914765 - 47914875
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| |||||    
T  47914765 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaat 47914864  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  47914865 ccaatacaccc 47914875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 48152471 - 48152385
Alignment:
Q  276 aaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatcca 362  Q
    ||||||||| |||| ||||||| |||| |||| ||| |||||||||||||||||| | ||||||  || ||| || |||||||||||    
T  48152471 aaatcctttgaaattcaaattacaaatcttaatagttttttaaaatcttaaaagtaattaaaatcttgcataatcatttaaaatcca 48152385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 419
Target Start/End: Complemental strand, 7717980 - 7717864
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactg-tcatttaaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| || || || |||| |||||    
T  7717980 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgttctttaaaatcctaat 7717881  T
Q  403 tcaatacaccctcctta 419  Q
      |||||||| ||||||    
T  7717880 ctaatacaccttcctta 7717864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 413
Target Start/End: Original strand, 3635118 - 3635221
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatac 409  Q
    |||||||||||| ||||||||| || |||  || ||| |||||| |||||||  ||||||||| ||| ||||| |||| ||| |||| ||||| ||||||    
T  3635118 tcttttaaaatcctaaaagtcattacaatcttgcataatctttttaaatccactagactttttcatataaaaattgtcttttaaaatcctaatccaatac 3635217  T
Q  410 accc 413  Q
    ||||    
T  3635218 accc 3635221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 413
Target Start/End: Complemental strand, 40996241 - 40996130
Alignment:
Q  303 tttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaa 401  Q
    ||||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  ||||||||||||  |||||| | || ||| |||| ||||    
T  40996241 tttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaatcaaaaattatcctttaaaatcctaa 40996142  T
Q  402 ttcaatacaccc 413  Q
    | ||||||||||    
T  40996141 tacaatacaccc 40996130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 977364 - 977448
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||||||||||| | |||||||  |||||  || | ||||||||||||||   |||||||||||| ||||||| |||| ||||||    
T  977364 tcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcttcaagacttttttaaacaaaaattgtcttttaaa 977448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 34009583 - 34009631
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  34009583 agtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaa 34009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 24214796 - 24214686
Alignment:
Q  308 cagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaa 406  Q
    ||||||||||||||| | |||||||  |||||  || | |||||||||||||||  ||| |||||||| ||||||| |||| ||| |||| |||||||||    
T  24214796 cagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaaggcttttttaaacaaaaattgtcttttaaaatcctaattcaa 24214697  T
Q  407 tacaccctcct 417  Q
    |||||||||||    
T  24214696 tacaccctcct 24214686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 10391805 - 10391695
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || ||| ||||||||||    
T  10391805 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaattctaat 10391706  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  10391705 ccaatacaccc 10391695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 32711239 - 32711125
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| | || ||| |||| |||||    
T  32711239 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaat 32711140  T
Q  403 tcaatacaccctcct 417  Q
     ||||||||||||||    
T  32711139 ccaatacaccctcct 32711125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 33850929 - 33851039
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  33850929 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 33851028  T
Q  403 tcaatacaccc 413  Q
     ||||||||||    
T  33851029 ccaatacaccc 33851039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 42936904 - 42936790
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| ||||||| |||||| | |||||||  |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| |||||    
T  42936904 ttaatagtctttcaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaat 42936805  T
Q  403 tcaatacaccctcct 417  Q
     ||||||||||||||    
T  42936804 ccaatacaccctcct 42936790  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 7506506 - 7506433
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctcctta 419  Q
    |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||| ||||||||||||||||    
T  7506506 agtcttttaaaatccttaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccctcctta 7506433  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 4949710 - 4949650
Alignment:
Q  262 aaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaatc 322  Q
    |||||||||  ||||||||  || |||||||||||||||||||||| ||||||||||||||    
T  4949710 aaatcttatgatataaatctattgaaatccaaattataaattttaatagtcttttaaaatc 4949650  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 422
Target Start/End: Complemental strand, 5576246 - 5576126
Alignment:
Q  303 tttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaa 401  Q
    ||||| |||||||||||||| | ||||||   |||||  || | |||||||||||||||  |||||||||||| ||||||| |||| ||| |||| ||||    
T  5576246 tttaatagtcttttaaaatcatcaaagtcgtcaaaatcttgcaaagtcttttaaaatccccaagacttttttaaacaaaaattgtcctttaaaatcctaa 5576147  T
Q  402 ttcaatacaccctccttagat 422  Q
    | |||||||||| | ||||||    
T  5576146 tccaatacaccccctttagat 5576126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 388
Target Start/End: Complemental strand, 33972026 - 33971924
Alignment:
Q  286 aaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaact 385  Q
    |||| |||||| ||||| || | |||||||||||| | | ||||||| ||||||| || | |||||||||||||||  |||||||||||| | ||||| |    
T  33972026 aaattcaaattgtaaatcttgatagtcttttaaaaccatcaaagtcattaaaattctgcagagtcttttaaaatccttaagacttttttaaataaaaatt 33971927  T
Q  386 gtc 388  Q
    |||    
T  33971926 gtc 33971924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 340
Target Start/End: Complemental strand, 14028087 - 14028020
Alignment:
Q  273 tataaatcctttaaaatccaaattataaattttaacagtcttttaaaatcttaaaagtcactaaaatt 340  Q
    |||||||  ||| ||||||||||||||||| || | ||||||| |||||||||||||| | |||||||    
T  14028087 tataaattttttgaaatccaaattataaatattgatagtctttaaaaatcttaaaagttattaaaatt 14028020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 42938024 - 42938091
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgt-catttaaattctaattcaatacaccc 413  Q
    |||||||||||||||  |||||||||||| ||||||| ||| |||| |||| ||||| ||||||||||    
T  42938024 agtcttttaaaatcctcaagacttttttaaacaaaaattgtccattaaaatcctaatccaatacaccc 42938091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 424
Target Start/End: Original strand, 37915545 - 37915623
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctccttagattt 424  Q
    |||||||||||||||   ||| ||||||| ||||||| |||||||| |||| ||||| ||||| |||||||| ||||||    
T  37915545 agtcttttaaaatcctctagaattttttaaacaaaaattgtcatttaaaatcctaatccaatataccctcctaagattt 37915623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 24501433 - 24501324
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  || | | |||||||||||||  |||| ||||||| ||||||| |||| ||| |||| |||||    
T  24501433 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaat 24501334  T
Q  403 tcaatacacc 412  Q
     |||||||||    
T  24501333 ccaatacacc 24501324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 423
Target Start/End: Complemental strand, 42734883 - 42734806
Alignment:
Q  347 agtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatacaccctccttagatt 423  Q
    |||||||||||||||  |||||||||||| ||||||| | || ||| |||| ||||| |||||||||| ||| |||||    
T  42734883 agtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcctaatccaatacacccccctaagatt 42734806  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 321
Target Start/End: Complemental strand, 29976924 - 29976828
Alignment:
Q  225 aatcttataaacctataaagtcatttcaaatcccatgaaatcttatcgtataaatcctttaaaatccaaattataaattttaacagtcttttaaaat 321  Q
    ||||||| ||| | ||||| | |||||||||||  | |||||||||  | ||||||  || ||||||||||| ||||| |||||| |||||||||||    
T  29976924 aatcttaaaaatccataaaataatttcaaatcctttaaaatcttatgatgtaaatctattgaaatccaaattgtaaatcttaacattcttttaaaat 29976828  T

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Target: scaffold0151 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 417
Target Start/End: Complemental strand, 24643 - 24529
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaat 402  Q
    |||| |||||||||||||| | |||||||  |||||  |  | |||||||||||||||  || ||||||||| ||||||| |||| ||| ||||||||||    
T  24643 ttaatagtcttttaaaatcatcaaagtcatcaaaatcctccaaagtcttttaaaatcctcaatacttttttaaacaaaaattgtcctttaaaattctaat 24544  T
Q  403 tcaatacaccctcct 417  Q
     ||||||||||||||    
T  24543 ccaatacaccctcct 24529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 14691 - 14600
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | | |||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  14691 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaa 14600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 395
Target Start/End: Complemental strand, 15334 - 15243
Alignment:
Q  304 ttaacagtcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa 395  Q
    |||| |||||||||||||| | |||||||  |||||  || | | |||||||||||||  |||||||||||| ||||||| |||| ||||||    
T  15334 ttaatagtcttttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaa 15243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 413
Target Start/End: Complemental strand, 10967 - 10864
Alignment:
Q  311 tcttttaaaatcttaaaagtcactaaaattatgtatagtcttttaaaatccagaagacttttttatacaaaaactgtcattt-aaattctaattcaatac 409  Q
    |||||||||||| ||||||||| || |||  || ||| |||||| |||||||  ||||||||| ||| ||||| |||| ||| |||| ||||| ||||||    
T  10967 tcttttaaaatcctaaaagtcattacaatcttgcataatctttttaaatccactagactttttcatataaaaattgtcttttaaaatcctaatccaatac 10868  T
Q  410 accc 413  Q
    ||||    
T  10867 accc 10864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 37731 - 37662
Alignment:
Q  349 tcttttaaaatccagaagacttttttatacaaaaactgtcatttaaa-ttctaattcaatacaccctcct 417  Q
    ||||||||||| |  |||||||||||| ||||||| | || |||||| ||||||| ||||||||||||||    
T  37731 tcttttaaaattctcaagacttttttaaacaaaaattatcctttaaaattctaatccaatacaccctcct 37662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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