View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4910_low_21 (Length: 325)
Name: NF4910_low_21
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 34346345 - 34346035
Alignment:
| Q |
1 |
cgaattatcaacaaataaagttgttacaatcacaaattgctttctatccatttgtttctttatattaaaggagcccttaaacaaaagtcacaatcttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34346345 |
cgaattatcaacaaataaagttgttacaatcacaaattgctttctatccatttgtttctttatattaaaggaacccttaaacaaaagtcacaatcttttg |
34346246 |
T |
|
| Q |
101 |
nnnnnnnnacaagaaaaaagtcacaccctattctctagctnnnnnnnnngtcgcaatctattcaaccagcatgagatgaaagttccatagatcaaatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34346245 |
ttttttgtacaagaaaaaagtcacaccctattctctagctaaaaaaaaagtcgcaatctattcaaccagcatgagatgaaagttccatatatcaaatctt |
34346146 |
T |
|
| Q |
201 |
cnnnnnnnnaatgaatatttttcttctccgacagaccggaagttgattgatggtcaaatttgaacgtttgaatcaagaagtccttatcgtgtgcttaatt |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
34346145 |
cttttttttaatgaatatttttcttctccgacagaccggaagttgattgatggtcaaatctgaacgtttgaatcaacaagtccttatcgggtgcttaatt |
34346046 |
T |
|
| Q |
301 |
gaactctgttg |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
34346045 |
gaactctgttg |
34346035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 43809437 - 43809505
Alignment:
| Q |
242 |
gttgattgatggtcaaatttgaacgtttgaatcaagaagtccttatcgtgtgcttaattgaactctgttg |
311 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||| || || |||||| |||||||||||||||| |||| |
|
|
| T |
43809437 |
gttgattggtggtcgaatttgaacgtttgaaacaa-aaatcattatcgggtgcttaattgaactccgttg |
43809505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 17802807 - 17802759
Alignment:
| Q |
222 |
tcttctccgacagaccggaagttgattgatggtcaaatttgaacgtttg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| ||||| |||| |
|
|
| T |
17802807 |
tcttctccgacagaccggaagttgattggtggtcgaatctgaacatttg |
17802759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University