View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_25 (Length: 308)
Name: NF4910_low_25
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 51641783 - 51642048
Alignment:
| Q |
14 |
agggaagagtggataaggatgtgaatttaaaaaacgcaagtgatgaaaaggccggtagctgtgattgatcaatggagaaaagttgttttgtgaaaacaac |
113 |
Q |
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| T |
51641783 |
agggaagagtggataaggatgtgaatttaaaaaacgcaagtgatgaaaaggccggtagctgtgattgatcaatggagaaaagttgttttgtgaaaacaac |
51641882 |
T |
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| Q |
114 |
agcaaaaccacgacgggaaaagttggcagtaatcataatgaatcttttccagaaacactgccatatgactaattaaaattccaattcaaattaccgtacc |
213 |
Q |
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| T |
51641883 |
agcaaaaccacgacgggaaaagttggcagtaatcataatgaatcttttccagaaacactgccatatgactaattcaaatttcaattcaaattaccgtacc |
51641982 |
T |
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| Q |
214 |
ttccaaatatttttgaaaatttgttgtagacacgttgcataaggttgtttcacacgagtaaaatacg |
280 |
Q |
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| T |
51641983 |
taccaaatatttttgaaaatttgct-taggcacattgcataaggatgtatcacacgagtaaaatacg |
51642048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 28320498 - 28320538
Alignment:
| Q |
234 |
ttgttgtagacacgttgcataaggttgtttcacacgagtaa |
274 |
Q |
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| T |
28320498 |
ttgttgttgacacattgcataaggttgtgtcacacgagtaa |
28320538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 25877561 - 25877607
Alignment:
| Q |
234 |
ttgttgtagacacgttgcataaggttgtttcacacgagtaaaatacg |
280 |
Q |
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| T |
25877561 |
ttgttgttgacacattgcataaggttgtgtcacacgagtaaaatacg |
25877607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 36186606 - 36186560
Alignment:
| Q |
234 |
ttgttgtagacacgttgcataaggttgtttcacacgagtaaaatacg |
280 |
Q |
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| T |
36186606 |
ttgttgttgacacattgcataaggctgtgtcacacgagtaaaatacg |
36186560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 26702793 - 26702747
Alignment:
| Q |
234 |
ttgttgtagacacgttgcataaggttgtttcacacgagtaaaatacg |
280 |
Q |
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| T |
26702793 |
ttgttgttgacacattgcataaggctgtgtcacacgagtaaaatacg |
26702747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 82395 - 82349
Alignment:
| Q |
234 |
ttgttgtagacacgttgcataaggttgtttcacacgagtaaaatacg |
280 |
Q |
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||||||| ||||| |||||||||||| | |||||||||||||||||| |
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| T |
82395 |
ttgttgttgacacattgcataaggttatgtcacacgagtaaaatacg |
82349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 49874947 - 49874987
Alignment:
| Q |
234 |
ttgttgtagacacgttgcataaggttgtttcacacgagtaa |
274 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
49874947 |
ttgttgttgacacattgcataaggttgtgtcacacgagtaa |
49874987 |
T |
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