View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4910_low_26 (Length: 305)
Name: NF4910_low_26
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 68 - 290
Target Start/End: Complemental strand, 43555078 - 43554855
Alignment:
| Q |
68 |
tttgataaattactaaccatctnnnnnnntttatcagatgaattggaactaatttttaaatttttattgttagatgaattgaatagaattaacttttgat |
167 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
43555078 |
tttgataaattactaaccatctaaaaaaattaatcagatgaattggaactaatttttaaattattattgttagatgaattgaatagatttaactttagat |
43554979 |
T |
|
| Q |
168 |
gaattgcatatatgtgaagagatgaatatatttaccaccctacttttaaactcttagta-nnnnnnnnnnnnnnaaagaactct-gtgtttcttttgttg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
43554978 |
gaattgcatatatgtgaagagatgaatatatttaccaccctacttttaaactc-tagtattttttattttttttaaagaactctagtgtttcttttgttg |
43554880 |
T |
|
| Q |
266 |
tttttataattccgttgtatggttt |
290 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
43554879 |
tttttataattcggttgtatggttt |
43554855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University