View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_28 (Length: 302)
Name: NF4910_low_28
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 48214762 - 48215024
Alignment:
| Q |
16 |
cagaagaaaccatcaaggagtgaaacttataggatgcaagactacattatataggtgcactatagtgtagcatatatttcatcactctatactgggtatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
48214762 |
cagaagaaaccatcaaggagtgaaacttataggatgcaagactacattatataggtgcactata--------tatatttcatcactctatattggatatg |
48214853 |
T |
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| Q |
116 |
ttgagtcaaagttagcctttggagttagttagagatcgtaaaagtttgttagaagactctagaacaataaatagttgatattgtacatttctcattttca |
215 |
Q |
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||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48214854 |
ttgagtcaacgttagcctttggagttagttagagattgtaaaagtttgttaaaagactctagaacgataaatagttgatattgtacatttctcattttca |
48214953 |
T |
|
| Q |
216 |
tcactcaatatatgagatttgattaagatttttatctctctgttagtttgttaagattttctctcaattcacc |
288 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
48214954 |
tcactcaatatatgagatttgattaagattttta--tctctgttattttgttaagattttctctcaattcacc |
48215024 |
T |
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