View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_32 (Length: 290)
Name: NF4910_low_32
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 29341280 - 29341529
Alignment:
| Q |
16 |
atcaacaataatgaaatcttttaaatttacaagacaactatgattaattatatgttcaataaaagaaactatgattgtatgtaaaatgnnnnnnnnncca |
115 |
Q |
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| T |
29341280 |
atcaacaataatgaaatcttttaaatttataagacaactatgattaattatatgttcaataaaagaaactatgattgtatgt---------ttttctcca |
29341370 |
T |
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| Q |
116 |
acaaggcttcatatttttcaatttaaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattag |
215 |
Q |
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| T |
29341371 |
acaaggcttcatatttttcaatttaaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattag |
29341470 |
T |
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| Q |
216 |
cttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccat |
274 |
Q |
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| T |
29341471 |
cttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccat |
29341529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 29357305 - 29357557
Alignment:
| Q |
22 |
aataatgaaatcttttaaatttacaagacaactatgattaattatatgttcaataaaagaaactatgattgtatgtaaaatgnnnnnnnnnccaacaagg |
121 |
Q |
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| T |
29357305 |
aataattaaaacttttaaatttacaaaacaactatgattgattatatgttcaataaaaaaaaccataattgtatgtagaat-tttttttctctaacaagg |
29357403 |
T |
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| Q |
122 |
cttcatatttttcaatttaaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattagcttcaa |
221 |
Q |
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| T |
29357404 |
tttcatatttttaaatttcaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattttataggctctaaggattagcttcaa |
29357503 |
T |
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| Q |
222 |
gaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccatt |
275 |
Q |
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| T |
29357504 |
gaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccatt |
29357557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 274
Target Start/End: Complemental strand, 44660412 - 44660254
Alignment:
| Q |
116 |
acaaggcttcatatttttcaatttaaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattag |
215 |
Q |
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|||||||||||||||| | ||||| || || |||||||||||||||||| ||| |||||||||||| |||| |||||| ||||||| ||||||||| |
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| T |
44660412 |
acaaggcttcatatttgtaaatttcaatatttcaatgattacctaattaagattttatctaaaattttgctttgctgattgaataggctccaaggattag |
44660313 |
T |
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| Q |
216 |
cttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccat |
274 |
Q |
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| T |
44660312 |
cttcaagaaacccatcgacagtgtaacaatttcaggccataagtttttgggatgcccat |
44660254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 44683505 - 44683399
Alignment:
| Q |
171 |
catctaaaattttattttggtgattgtgt---aggctctaaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttggga |
267 |
Q |
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| T |
44683505 |
catctaaaatattgttttggtgatgatgttacaggctctaaaggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttggga |
44683406 |
T |
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| Q |
268 |
tgcccat |
274 |
Q |
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||||||| |
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| T |
44683405 |
tgcccat |
44683399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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