View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4910_low_33 (Length: 289)
Name: NF4910_low_33
Description: NF4910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4910_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 32739024 - 32738742
Alignment:
| Q |
1 |
cgacccaacccaagacacttccgacgagcaacaaaaacgttccgaaatctacacttacgaagcaccatggcacatctacgctatgaactggagcgtccgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32739024 |
cgacccaacccaagacacttccgacgagcaacaaaaacgttccgaaatctacacttacgaagcaccatggcacatctacgctatgaactggagcgtccgt |
32738925 |
T |
|
| Q |
101 |
cgcgacaaaaaatatcgcctctctatcgcttctctcttagaacaataccctaaccgcgtcgaaatcgttcaacttgatgacaccaccggcgaaatcaaat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32738924 |
cgcgacaaaaaatatcgcctcgctatcgcttctctcttagaacaataccctaaccgcgtcgaaatcgttcaacttgatgacaccactggcgaaatcaaat |
32738825 |
T |
|
| Q |
201 |
ccgacccaaatctctccttcgaacatccttacccacccaccaaatccatcttcatccctgacaaagactgccaacgccccgac |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32738824 |
ccgacccaaatctctccttcgaacatccttacccacccaccaaatccatcttcatccctgacaaagactgccaacgccccgac |
32738742 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 17047446 - 17047414
Alignment:
| Q |
212 |
ctctccttcgaacatccttacccacccaccaaa |
244 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
17047446 |
ctctccttcgatcatccttacccacccaccaaa |
17047414 |
T |
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